Protein Info for mRNA_2199 in Rhodosporidium toruloides IFO0880

Name: 10567
Annotation: K05724 FGD5_6 FYVE, RhoGEF and PH domain containing 5/6

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1047 PF00621: RhoGEF" amino acids 215 to 527 (313 residues), 95.7 bits, see alignment E=4.1e-31 PF01363: FYVE" amino acids 852 to 928 (77 residues), 68.5 bits, see alignment 4.6e-23

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1047 amino acids)

>mRNA_2199 K05724 FGD5_6 FYVE, RhoGEF and PH domain containing 5/6 (Rhodosporidium toruloides IFO0880)
MPRDLSSLTPLPVAPISDDCLSKHASAPPAVLFPSSPAPPNEPTFIPFPTRSKSPPACSS
RLSVASNASSKRDSTLVSGPRPPFLRQRQTSLPASLVASRHYSFAGNLTSGANRFSVASF
SSCESVAEEEDIGERPNGGQAGKAIATGQSASSPASRRSSISSKRYSVSPLEGQYQSFAS
ASVSADALDNSSKSSVSSDTDAATVAKRNERRWRIAEELRDTEQGYVAVLEEVDELYYQP
LLSALPTNDPLARRSSKRYSAMSAGSTPSHSPRHSLDLHTQSTARPAPRTRTSTADSHLS
DKSSPTATTAQSSILRRREINEIFSNFADVLNLSRFMLATMEEAIPPRPSQPVPLVPAHE
STTSSTASRSAPDQATTAAFSASADSRSSSPFEGIPSSRPRQRTLSTRSDASRRRRQPAP
PFALGKALLPVLPFLKQYSLFCANYGSALSRLARLEQSSIWREFVAKQEKLQAGKIGLAG
LLLSIVQRVPRYRLLLQELVEYTDDDHPDATDLEAAFALVDQVATHLDAQIASHTHSLEL
LDLQRSFHALPFTLLEPGRRLIKSESLVKIAHSGKEEKRQFLLFSDILIEATQEDDWSTF
ASASGATFTFRHRFELDDITVVANEETSEEGVKKYGIEVLSSQQSFLAFADSGIERDIWL
DTLRTAKAQLMSDRTTLQRTTSLSSAPPRRANLRNDRRISLPPAATPTPFTHNPPSLSHL
VVPSRQISLPPALGYIPPTPNEELDKQLQADDRQLSHSPLSSPTLPPAPAHPSFPRQSSA
PAVQFTAEAALLATSTSTSTPTPGRPSLSRARRWSEAPSIALQALSSALALDPLTDVDAV
EYPVVDEYRAPVWVPDSKASRCMNCRTPFGLWRRKHHCRLCGNIMCFACSNKYFLIPASL
LSGSSGTFDVSAEPDRLARSCDTCYASLFLPSSPSASTLSRSSRLLASRPAPADPEIAKL
PPTIRVRSGTGKGRVLGAWDAAGGGGGTWKGTWSKRRVGEVDWAALRDVEGAGSEPVQVP
ARKSRARRESVVDKLRGLLARGGADAI