Protein Info for mRNA_2203 in Rhodosporidium toruloides IFO0880

Name: 10571
Annotation: K13339 PEX6, PXAAA1 peroxin-6

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1243 PF00004: AAA" amino acids 605 to 737 (133 residues), 42 bits, see alignment E=6.2e-15 amino acids 886 to 1019 (134 residues), 152.6 bits, see alignment E=4.3e-49

Best Hits

Predicted SEED Role

"Cell division protein FtsH (EC 3.4.24.-)" in subsystem Bacterial Cell Division (EC 3.4.24.-)

Isozymes

Compare fitness of predicted isozymes for: 3.4.24.-

Use Curated BLAST to search for 3.4.24.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1243 amino acids)

>mRNA_2203 K13339 PEX6, PXAAA1 peroxin-6 (Rhodosporidium toruloides IFO0880)
MDSHSAHYCTLQTHSTTALASPALWTALVDSLPGPDRDDPPTRLALALAPRHARSARAKE
LRTVVVRAREASKLEMKEAGEDLPENVLLLPTRLVQAHPAVFTRRSSSSPTSASPPSLSL
TIAQTVPLSSAIFLSLDSASYTNASDKSGRLETLLAGKDADLVREGDVVDLPGVGRWKVA
VTEPVLQGVFVKGQTRLLVLPPADGGAQEDEADARLADGTDASEEDDLLDFDIDDSFLAS
TVLPSRRSHATPFTSPLPSSAQNGKSFPLVAPPPTTHSGTPISALPLSFPVPAESLTPTP
DADEDDLPHALASTADLGRLGLFSGDWALVEPSGAMEGEEQKEEDRGRLVRVFAGEGLLE
GREVVTSSAPTLYLPPPLLFNLLGPSSLSSSLSSPVTLTLHPAPLLSPILPLPLPTASSL
TISRLASPHSVNKLYQPLFLEGLKEYFSGRRRAVKRGDVICVGIDEEKVRFVGEGKGEGV
EEDFDLPAESTTPTAVVHFLITSLSVDPSTSSSAPTGDFDLDRRLEDGLLGCFVDPKVTK
LLQTGVERGRVPDDAGWMGIEPSPNVSLAPDSLLGTPTPASKLYDFLLSSLTPRASTYSL
PLTALLKGALGSGKRNLIRSVARRAGVGLLELDCFDLLGESDAKTEGRLRALAVDKALAC
APVVLVLRNVEALARKSQAMETGQEPPMTTVLRDCFATIRDGWKASGHPVVVVATTTDVE
KVPTGVLGLFKEEIGIQAPAEPERLAILRNLTASDIISPDVSLRSLAVQTAALVANDLVD
LVRRARAAAAERVLELASSTDATTPAPSLADIAHAGVALTSLDFNSALEKARSAYSESIG
APKIPNVTWDDVGGLANVKSDILDTIQLPLEHPELFADGLKKRSGILLYGPPGTGKTLLA
KAVATSCSLNFFSVKGPELLNMYIGESEANVRRVFQRARDAKPCVVFMDELDSVAPKRGN
QGDSGGVMDRIVSQLLAELDGMSEGKGGNDVFVIGATNRPDLLDPALLRPGRFDRMLYLG
VSNTHQAQLNIIQALTRKFKLAPETDLAKLAEKCTFNLTGADFYALCSDAMLKAMTRKAE
EVDKRIAELNAQPPYSTGETPPLTPQYYLAEMATPAEIEVLVAQQDFDAALAELVPSVSQ
AEMNHYKTVQQRFSAETMNSDDNLAAQEKKEAAPVSSPSPSLSQLPAAIPGPFKPNGVVK
GPVEKVVSNGLVVDGVQDVVDPEEEEKRRKRRAAKGKGKARAE