Protein Info for mRNA_2211 in Rhodosporidium toruloides IFO0880

Name: 10579
Annotation: K09486 HYOU1 hypoxia up-regulated 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 891 signal peptide" amino acids 1 to 35 (35 residues), see Phobius details PF00012: HSP70" amino acids 39 to 754 (716 residues), 287.1 bits, see alignment E=3.7e-89 PF06723: MreB_Mbl" amino acids 159 to 244 (86 residues), 23 bits, see alignment E=4.9e-09

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (891 amino acids)

>mRNA_2211 K09486 HYOU1 hypoxia up-regulated 1 (Rhodosporidium toruloides IFO0880)
MPLHSRPRHPSLVALLAALVSALLAASFVPSASAASLLAIDYGTDSFKASVVKPGIPFDV
LLTKEGKRKAPSIVTFRGEERLVGGDAQNLATRFPQDTLSSVKLLLAHPPSHVQSQLHYS
LFSIPQTTTSRHSPALQTSKLSVPVEEALAYQFVYAKEMAEEQAKEPVSEAVVTVPGWFA
EAERKAVIDAAEIAGLRVVGLVNDGSAVAVNYAMSRTFPPEPSYHLIYDLGSGSLRVTLV
SLRSAMLPDPLSLAETPQLKNVTSIEVHGFGYDLEVGGYVFDCAVRDLLVEAFEQTTGKQ
LEQGRKVTDDKRAMAKLLKEAARVKQVLSANTAAMARIEGLIDDLDFRTEITRSALESRA
SSLLTRLVSPIQSALDSASLPLSSIESVILVGGSSRIPLVQKAVAEKVGEEKIAKNVNAD
EAAVLGAALYGAGITRGFRTKDMRVRDLVPFGIDVAYEAERKEGADSRIITTHLFPSNSA
TSSKKTLTLRKTSDFSLDFSYAPSSSPSVPAGHLFSTHLKGISAATANLTAEQLVNATVK
VAVEVDASGLVRVGKAELVLREEEEGEGGKKGGVTDKLKGLFNKFSSGGKNSTASSSSSS
SAPTAEETATPEQDALTDEEKQQLDEMIRQAQLPPARVRLSVETQGGEGAAGMGSEEKME
LKKRLRDAKTALTRKLAHEEARNALESYVYRVRDLLENNEAFVAASVESERRAVREVQER
TAEWLWDEGEGAETKVLKEKKRELEKLVKHILSRSTEAVARPAAVSQLRDQLTKTSSFLS
TARADAAALTKSDPTAPQRFTADELDSLDKLVKESQVWLDDALKRQEKVKAHEDPAFKVA
EVEKKMKEVERETSRLGKKKQPRRKKAIKAAPAAAEEEAEKPKQEHKKDEL