Protein Info for mRNA_2220 in Rhodosporidium toruloides IFO0880

Name: 10588
Annotation: K14411 MSI RNA-binding protein Musashi

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 542 PF16367: RRM_7" amino acids 121 to 179 (59 residues), 28.3 bits, see alignment 1.6e-10 PF00076: RRM_1" amino acids 123 to 182 (60 residues), 65.3 bits, see alignment 3.5e-22 amino acids 206 to 264 (59 residues), 55.8 bits, see alignment 3.2e-19

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (542 amino acids)

>mRNA_2220 K14411 MSI RNA-binding protein Musashi (Rhodosporidium toruloides IFO0880)
MADDEYDDLYGDLYPGEAEYGSGASASTGAATTPAAAPAHSTSTNATSAPAAASPAPATS
AIPSFADGPRPSSLPAPPVAATAAATNPPLHFSSGAQGMQQQQRPMVQTGVRPNDMPEEG
KMFIGGLNWDTTDETLKMYFEQFGPITHCTIMRDSETGRSRGFAFLTFENPSSVNAVMAR
EHHLDGKTIDPKRAIPRSETAKTDKLFVRALPATCTQESFRQFWRQFGPITDATLMMDKE
TGRHRGFGFVNYETREAVEKVLNSGPHYMDGQMLEVKRAQAKGEPRRNDYGMNTNQQYTP
QPYGGAGGASGGGMGGGGMGGAGNMGMNAMGGGAAGAGGAGTPFDPAAMSKFFAQMGWGG
FNPMMLGGMGGGMGGGMGGGMGGFNPMAMGGMGGFNPMGMGFGMPNMGMGGMGSPTGADG
GAAAGGAATSGDGAAAAGGDGAAGQSSPWTAPMAAPISMRGGRGGAMGGGAMRGGRGGGR
AGANPPVRCAFSSPPPRCRADRICRTDWTGLDARRRRRRPSAESWFRRRLPRACPSSLLL
LT