Protein Info for mRNA_2229 in Rhodosporidium toruloides IFO0880

Name: 10597
Annotation: HMMPfam-Hsp70 protein-PF00012,PRINTS-70kDa heat shock protein signature-PR00301,ProSitePatterns-Heat shock hsp70 proteins family signature 2.-PS00329,ProSitePatterns-Heat shock hsp70 proteins family signature 3.-PS01036,SUPERFAMILY--SSF100934,SUPERFAMILY--SSF53067

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 738 PF00012: HSP70" amino acids 28 to 596 (569 residues), 178.9 bits, see alignment E=1.4e-56 PF02782: FGGY_C" amino acids 191 to 295 (105 residues), 30.7 bits, see alignment E=2.6e-11

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (738 amino acids)

>mRNA_2229 HMMPfam-Hsp70 protein-PF00012,PRINTS-70kDa heat shock protein signature-PR00301,ProSitePatterns-Heat shock hsp70 proteins family signature 2.-PS00329,ProSitePatterns-Heat shock hsp70 proteins family signature 3.-PS01036,SUPERFAMILY--SSF100934,SUPERFAMILY--SSF53067 (Rhodosporidium toruloides IFO0880)
PVNGVPVDDFRILRQEPLAYQFVYAKERAAVATVPGRFAEAERKAALDAAEIARLRIVGL
VNNGSEVTINYVMSRTFPPEPSYPLIYDLGSGSLRVTLVSLRSAMLPDPLSLAETPQLKN
VTSIEVHRFGYDLEVGGYVFDRAVRDLLVEAFEETTGKQLEKGRKVTDDKRALAKLLAEA
AHVKQVLSANTAAMARRRARIEGLIDNLDYRTEITRSALESCASSLLTHLVSPIQHALDS
ASLPLSSVESVIVVGGSSRIPLVQKAVADKVGEVMIAKNVTADEAAVLGAALYGAGITRG
FRTKDMRVRNLVPFGIDVAYEAERKEGTDSRIITTHLFPSNSATSSKKTLTLRKTSDFSL
DFSYAPSTSSAAPSGHLFSTHLKGISAATANLTAEQLVNATVRVAVEVDASGLVRVGKAE
LVSREEEEGEGGKKGGVTDKLKGLFNKFSGKNSTAPSSSSSSAPTAEENATREADNSTDE
EKQQLDEMICQAQLPPARVRLTIKTQGGEGAAGTGSKEKMEARNALESYVYRVRDLLENN
EAFVAASVESEREREREKILAVREVQERTVEWLWDEGEGAETKVLKEKKRELECKLVKHI
LSRSTEAVARPAAVSQLRNQLNKTSTFLSTARADAAALTESDPTAPQRFTTDELELLDKL
VKESQSWLDNAIKRQEKLKAHEDPALKVAEVEKKVKEIERETSRLEKKKQPRRKKAIKAA
PAAEEAEKPKQEHKKDEL