Protein Info for mRNA_2241 in Rhodosporidium toruloides IFO0880

Name: 10609
Annotation: K12572 PAN3 PAB-dependent poly(A)-specific ribonuclease subunit 3

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 746 PF18101: Pan3_PK" amino acids 605 to 742 (138 residues), 215.8 bits, see alignment E=1.1e-68

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (746 amino acids)

>mRNA_2241 K12572 PAN3 PAB-dependent poly(A)-specific ribonuclease subunit 3 (Rhodosporidium toruloides IFO0880)
MPPGSAAIAIVKPGANHPSLSPTAKPARPPAATASQGKQPGQRGAQVGLRPPASPVPAAP
STPLSVAAASAAEFVPGGSSSTGGGSDAGSRATGTMTPGGSTMAAKAAEFVPRRAVTPAL
SEDAPFFTPAGQQQAPSAPGSVADSSYGRAMAEANQQTAEGLSEYYQQAMDLNAPDYTRP
MPGTDPSASLNPYNFAHALAPPGANGGAPGLPGLGHAAAAAAAEAAYYHNGMGAMHPAAM
GFQRQPLQYHLYHPLPSTNPRHLSSNLSSRTGSHSPTTSFFLPPALHISLTQKSEATQTT
PSVDLKLPEEVGGYTGLVPLDRPPSEGGGGGVGWVGYRGWVYKAWKEGEGRCYALRRIEG
FRLQHEAAIAAVEKWTRVRHPGLVGVREAFTTRAFGDHSIIFVYDFHPCSQTLYEAHLSP
LASLPPNPWSTPLTHHHHPAQHHVHHGPHAAHASPFRPGGTLARPAGSSPSSTPAGGANS
TALPERVLWSYVVQLASALKCVHNSGLAMRTVDVNRVLVTGKNRVRLGGGGVLDCLTWDG
GQNIPAHQQDDLLSFGKLIIALACGSTSAVHNLPKSVDHISRMYSPDLKNVVLYLLSKPG
PRKTIEEVLALMGPRVVDELNSSLVAEDTLEHELMRELENGRLVRLLTKFGFINERPEFD
HDPRWAETGDRYLIKLFRDYVFHQVDETGRPVTDLSHVLTALNKLDAGVDEKIMLVSRDE
QSCLIVSYREIKNCIESAFADLSRSS