Protein Info for mRNA_2252 in Rhodosporidium toruloides IFO0880

Name: 10620
Annotation: HMMPfam-Signal recognition particle 9 kDa protein (SRP9)-PF05486,SUPERFAMILY--SSF54762

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

No protein families (PFam or TIGRFam), signal peptides, or transmembrane helices were found in this protein.

Best Hits

KEGG orthology group: K03109, signal recognition particle subunit SRP9 (inferred from 42% identity to cci:CC1G_02172)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (129 amino acids)

>mRNA_2252 HMMPfam-Signal recognition particle 9 kDa protein (SRP9)-PF05486,SUPERFAMILY--SSF54762 (Rhodosporidium toruloides IFO0880)
MLYRDFDRFKQACEELYARSGPKTRTCIRWRADVGLLVMRLTDDVQTLTFKTRSKSFLNR
FDSLNLTLLRKYHNRGRLSAHAQLDAPGPSEHTIPDPSVSLSAGDGAKGEADGASSRTKR
KKGKKKQGK