Protein Info for mRNA_2262 in Rhodosporidium toruloides IFO0880

Name: 10630
Annotation: KOG0899 Mitochondrial/chloroplast ribosomal protein S19

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 75 92 PF00203: Ribosomal_S19" amino acids 28 to 86 (59 residues), 78.4 bits, see alignment E=1.5e-26

Best Hits

Swiss-Prot: 51% identical to RT19_YEAST: 37S ribosomal protein S19, mitochondrial (RSM19) from Saccharomyces cerevisiae (strain ATCC 204508 / S288c)

KEGG orthology group: None (inferred from 59% identity to uma:UM02386.1)

Predicted SEED Role

"SSU ribosomal protein S19p (S15e)" in subsystem Ribosome SSU bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (92 amino acids)

>mRNA_2262 KOG0899 Mitochondrial/chloroplast ribosomal protein S19 (Rhodosporidium toruloides IFO0880)
MWRSPVLLSRSKWKVPYFVPFPGLAEAIKSNSPIRTTARNCTIMPFHVGATFLVHNGKDY
IPLHVTPAHVGHKLGEFAHTKKPARHTPRKGR