Protein Info for mRNA_2276 in Rhodosporidium toruloides IFO0880

Name: 10644
Annotation: K02954 RP-S14, MRPS14, rpsN small subunit ribosomal protein S14

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 108 PF00253: Ribosomal_S14" amino acids 52 to 107 (56 residues), 77.3 bits, see alignment E=3e-26

Best Hits

Swiss-Prot: 47% identical to RT02_ASHGO: 37S ribosomal protein MRP2, mitochondrial (MRP2) from Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)

KEGG orthology group: None (inferred from 49% identity to ssl:SS1G_09154)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (108 amino acids)

>mRNA_2276 K02954 RP-S14, MRPS14, rpsN small subunit ribosomal protein S14 (Rhodosporidium toruloides IFO0880)
MGFAKGLPNWAALKDYKRRQAFAANETLRQALKYLTQNTTLDYRTRVAAMHKLAAMPAYT
RPTEIRNRCILTGRGRGQIASKEFGLSRHRFKLAAERGELPGVERASW