Protein Info for mRNA_2280 in Rhodosporidium toruloides IFO0880
Name: 10648
Annotation: HMMPfam-B-block binding subunit of TFIIIC-PF04182
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Predicted SEED Role
No annotation
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (2159 amino acids)
>mRNA_2280 HMMPfam-B-block binding subunit of TFIIIC-PF04182 (Rhodosporidium toruloides IFO0880) MIDSLLQFLLEEVAMDGDAGTSVTSLGGFVEQFYDRASSGLDEPSTSDGTRAQRVDDAFL SFVWDALISQPGVRVGVLSQLAAPAAEEPRVEEQGNQDGAPPADGEDAEEAKTTKGKGKK KKIERKAQGPTHEVRIIEGDEREEGRATLQDRYGDSLRILAGEETAWVAITGSHARPTSL TPTIYAVLQMISRGRDQGTTAVRISKEMGIDPKSVFHYIKIPQQLGIIKKFSDIDEGCRT NRVVHVRYLSTSAAWAAHIASEPDVKEEENGEEDGEDGADAGFGGGWDGTELTPISTLYL TTNMPLIRKRVVKALKRRKDWWMPHFELHSAIGLHTANSRELRRLNSIVSVMANEGIVEK IAVTKKRSATQSSVIQALRLLKPEETQEGANGSEALASDEDAEDDEHACPVAYRPLERQI LDLLMDAGSRGLTNFEVSAALGAYPVRFLDVLLQRFGRYRPPAPSADYTIHSVHETVGRV KQTRWFSLVGYLSFRRSRGFPDEDMEAQWREIAESASLGGWLTPEGEGPAEGQYGSNKER HACLAKFNLWATTAKSVTGVSKEPKKAAPKKRKSAAIEASDGVAQPADGDAEEEAEDASP PPKRQKAVIGRPRKHPLKPGQETYYMRKKREKAEDEERARQGLPPIERPKARNAKKKPKK EEAEQAAEAATGEGEAGSSGTPRAAAPVDAPPATTPAPAKKRGRQPKKKDVAAETAAGNE PAAGPSTPQVPATPATPATKPRKRARTAAAADSSTPATPAAPAAPKTKSTTRPRLEPYID IPQSSASKKKSVVKKALDALAGIHSSSPPRGGGPASPNLDTPDKRIEQPANEQPAEALAE APAQPAAEVAASGTPAHAPPATPAATPAPIVRIATPAAPVLPTPISKKKPATSRPSVSSR ANLTLLARQQEVVDYIQAQGGVLEYTYRLNEALYAWGQKQNPPRHGYMIDRANLKQVLEA ATSSGQLRKTVVTDIKSQRHDVFYLPSLASDSGVVKNYLDNIANRDPYNRFTMYEVQPDL VVMSDEDMPTEEKQEDNGNAENSFLLDPRPTDGQERVRSFFCHQQTLLGRSHGVKHGLVA RARQLHKWLASLVFSHVDEKDVVVKRDEDGFVIAQSTLLNSMPLGVFLRIVPLPIQSETL DAFLAQPDNLELPMRDVPKEIADIIRPRSNKRKQALWKDLEILIDLQLLTPLVIGNVATT RPVAPTLEAPNNPKACTHWLFRARAPVYALRDPALPLVDVCPVTNIDEVLYFWNRLHSVS TDPSYDDAGHALDDPVFPATYPTRHLRKNELLRPFKWRDSYELAPSQRTFLNKLAHHDPG LIDSDADRTADLEAWAACLLAPPNVVKDYLVKIRDQEAEELVRSKRKKRKTDGARGGAGD GDEEGADGAKTPTNLAAALARKVREAADQRERDWQVIVERFRQEHGHPDLDESIVDWLHK TFQDPRRRDKLDTKQLDFELRRLLPADQKTPTDPPMRTIVPTSLQQKARLAKDPYAIKRQ PNIRRRPVVKRVRAKQAPPAKEPAGEEEDEEEDEEAAGSPSPAQEPAPAEGCTTPLPFRR GDQTEFLTNPLGPRPDLPAGKRASRSRYTPEQDDLLLDAVAVLKVRALHLRAPRPSYNPL GDFFPGNKADALAKRAGTLLKRQQERDFHERLVSTWFDAYKEHKDELEDPNPNSLVDFDL ASFIRCMRTHVNKRALRLMGPLPPPLVKADPLPDSLDAFSRLYHVKPALEAVHSGRQFDK VWTKHQIAMNEREEAAVLGAYAKRWTDEPVKVEPLDCKHNLAMSAIKAIMTMEEESYVPA QGVAVLSQFSTTETKAALDELTAKAIAAQLDKEHRLPGRNFAFDDRFFERLSFHLDLAHL QTASHFEQDLQHDEGGAFPLVPTEGEMMALFDLVSDDKVELEVDLSELTEKTLDFLDYRT RQANDDDIECTVNISQPAGLSGMAVLPQPSFLPSTFANDADSLEGAKVTLSSIGRSLEAQ LYRDIEAAGEVGLPFESLLTRHEGRGRDAVLAAIQYLTAGPQPLAFFAGTSALVLVSNLH AAYWTFHPVLDDGNIDTSRRFLPTMWTNAMGEVDQELWQRAGAWVKGELWRFADQTYPSL LARATRLNILSAVDLQVILTAFLRASKVSRRSPSTGALLAADDLVDWELDTWSFDGAFW