Protein Info for mRNA_2290 in Rhodosporidium toruloides IFO0880

Name: 10658
Annotation: HMMPfam-GPR1/FUN34/yaaH family-PF01184

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 239 transmembrane" amino acids 47 to 67 (21 residues), see Phobius details amino acids 73 to 99 (27 residues), see Phobius details amino acids 102 to 123 (22 residues), see Phobius details amino acids 142 to 160 (19 residues), see Phobius details amino acids 167 to 191 (25 residues), see Phobius details amino acids 203 to 224 (22 residues), see Phobius details PF01184: Gpr1_Fun34_YaaH" amino acids 34 to 238 (205 residues), 143.4 bits, see alignment E=3.9e-46

Best Hits

Swiss-Prot: 44% identical to ALCS_ASPFU: Protein alcS (alcS) from Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100)

KEGG orthology group: None (inferred from 35% identity to nfi:NFIA_041010)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (239 amino acids)

>mRNA_2290 HMMPfam-GPR1/FUN34/yaaH family-PF01184 (Rhodosporidium toruloides IFO0880)
DSKAGASLRRQISVQLTAEQFERLYLQPGGQKAKGDLAQRFGNPTPLGIASLLLCHTPFS
CYLMGWIGTTTAAAPTLVGAMYFMGGLGLTVSGILEFILGNTFASVVFFTFGSFWLSFGF
LFQPEQGIATALGATSVEYNGGIALYLVWWACLTLIYLIASLRTNVVFVALFTTLDIVFW
LLATIFIKLAYANTTHLTELLKAAGAVGFLTSACGWYLLVVLILDSTGWPIKLPVGDLS