Protein Info for mRNA_2292 in Rhodosporidium toruloides IFO0880

Name: 10660
Annotation: K01669 phrB deoxyribodipyrimidine photo-lyase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 645 PF00875: DNA_photolyase" amino acids 111 to 284 (174 residues), 114.9 bits, see alignment E=3.9e-37 PF03441: FAD_binding_7" amino acids 441 to 639 (199 residues), 274.1 bits, see alignment E=6.5e-86

Best Hits

Predicted SEED Role

"Deoxyribodipyrimidine photolyase (EC 4.1.99.3)" (EC 4.1.99.3)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 4.1.99.3

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (645 amino acids)

>mRNA_2292 K01669 phrB deoxyribodipyrimidine photo-lyase (Rhodosporidium toruloides IFO0880)
MAAPKRVRSASSSASPVAENGGSAKKRARRSPTKEDEDVKPNIKEEAEDDDGSDPRFRSV
STTAALERDREHTSFPHEMEQTPLARLYDAMRELSEVKAAKDEKPSKDGVVVYWMRNKDL
RLEDNTALSYASAVAQEHSLPLIALHIFSLGDYKSHDRSPRRIDFQLRQLAYLRAELDKL
HIPLFTFTQSSERKAIPRILCEKLAEWNAFGLYANIEYEVDELRRDIEVLERTRDAREQG
EGWKGQVEFFKDFCIVAPGELLTKQGKPYSVYSPWQRAWAAHINSNLSSFISPQNGPVIA
NPSSARTHPILEPMFSHEVPTSLPGFELAEQEKKDMERLWPVGEGVTEGIMGRFLKTKMR
EAKFFEPPLEGDGNEVENPKKDSKIAKYTEGRNRVDWDGTSHISAYLAAGLISPRECVRA
VYKVVGGKEVPAGRDTGFGMWIQEVAWRDFYQHVLAAWPRVCMSKPFNLKYDGTIEWATD
DDESKFEAWKEGKTGFPIVDAAMRSLKAQGYMHNRCRMIVASFLCKDLLLDWRKGEKYFM
QMLVDGDLGSNNGGWQWSSSTGTDPSPFFRIFNPASQSEKVDPNGTYIRHWVPELKSVKG
KAIHNPSAALSKAEILKLGYVPPIVDHAEARKKAIEAYKEAAAQG