Protein Info for mRNA_2296 in Rhodosporidium toruloides IFO0880

Name: 10664
Annotation: K05289 GAA1 glycosylphosphatidylinositol transamidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 640 transmembrane" amino acids 39 to 61 (23 residues), see Phobius details amino acids 404 to 429 (26 residues), see Phobius details amino acids 457 to 477 (21 residues), see Phobius details amino acids 489 to 509 (21 residues), see Phobius details amino acids 516 to 536 (21 residues), see Phobius details amino acids 542 to 559 (18 residues), see Phobius details amino acids 579 to 596 (18 residues), see Phobius details amino acids 616 to 639 (24 residues), see Phobius details PF04114: Gaa1" amino acids 145 to 631 (487 residues), 332.2 bits, see alignment E=3.6e-103

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (640 amino acids)

>mRNA_2296 K05289 GAA1 glycosylphosphatidylinositol transamidase (Rhodosporidium toruloides IFO0880)
MASRLKALLRRPGGTEVPRDELATFQRALVRRSKVVKRIVAFAPLVRTLLVVAGLLYMLA
LPYKSIGRRHYISENALQPGQVNTYWNCADVHVADLYAESVAKWSAEDVTVEARSRAIQD
AFHELGLSASQQRYTFELARNSTLSGINTYAILAAPKTDGAEALVLSASWLSRAKDEQGR
PRINTRGVAIVLALANYFKKYAFWSKDIIFVISDGYSEGAQAWLDAYHDYGQSNLVTEPL
KLTTGPIWAALNLDYPHHSFSHIGIHYGEDVSNASQAEGANGHMPNLDFINSVSRILRNT
GIPTVLHSSDSSDTSFLPSFLQYAEIEAYAQAARNLFRQVALTADGRVLGPEGTFGKYRI
DAITLFGLPAEGPHGFHSLGRCVPATESIFRSLNNLLERFHQSFFLYIMTSIDSFIAVGN
YLAAPILVGAGMTIQGLVTWGQAGVGKEGNARERPVARATLVLAGATLAGAAEMQAISQV
DPLKELHDYLSPLLLGLHLVVPLFLSTLLSRPSLIGSLALTLRSLILLLSGLLVSITATL
NFGLSAFLSLYLCSTLLIAQPVTRRYPRRRATVRRLQQVTFACLSPTGIWTLWRTVNKAG
AEEWLRQLLKDWQIGGGWSLPVALVLVGPLVVAQAVVVVL