Protein Info for mRNA_2314 in Rhodosporidium toruloides IFO0880

Name: 10682
Annotation: BLAST Valine--tRNA ligase [Rhizoctonia solani]

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1018 transmembrane" amino acids 697 to 713 (17 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1018 amino acids)

>mRNA_2314 BLAST Valine--tRNA ligase [Rhizoctonia solani] (Rhodosporidium toruloides IFO0880)
MAQPSAPSQRPHRSPPRTTSTSPSTAVPGCPACCPACAPSTSTAESLSATEETANGLTVV
RGSAENGRRRDGGLSRPNGRATSARAKRSQARLASQKKKRVDAPAPTPAQPPPVVNKLKR
PPPAPPADGSPAPPPQPPIPPDGSVKTCEAVDRYDEVCGEVVVGGWKGKVPRRWCQMHED
EEKFVRASFWNSVSSLPRLARTHPLPSPTEITSSTSFTELEGWETIARQHMDLAKRAYDS
WVFHRTHFFAAGGDLVDRLEGRGEGEGGTDLARGAWEEVRLRGEKAEAVLKLIIRRSHFL
VCDAEDALWLLHPQSRCTHATANGYDSSSSQSSCECSHDASYCNHGEDGGLHGSECGCCA
NSSIVAAEDEDDQSACSCPRTSSTSHHHHHHHHHHHHSHRHPPHTLHRNHISPPDQAPHN
PLRPPGSPTLAPESEEPDPLLALDTLRRTELLELLSLTGSHASFIREGRKSVERVRIVEC
LFRRLISRDEELLVKAYRGGHDHVLRFFEDPALVTLPALARLHRALQRTSPLELKEAIMD
AFRAIAWEESGATETEEGEEGVGMQVLGGWLYRYQLSRSMTPREWSHLYDLCACPGCATT
CCQRFTDLALIRRLSVVPHGPHPPPFESWAQPGETDAKKVFKALDVVWCAGKEKDDVRKV
RKMTQPGINIGMGAETVWAARQERNWAFLKLSLTHPHALSILTLLSQFFTLLVRSRLTPS
HPLPPFPLPPPAHLWTHRIRTAPTKAALSRPPSPSTSSSSSLAVSAPSPSSHPWRALPNP
FNLSHSPAHILAGFDALDSPEKEQDMPPFDGTYEILVLDAPSDSPYAFVEAYIPRPLAAF
ENFLASVIASACGIKVPGVTVFDEDNSTANGADSHAVAGKQGMDMPALLQAALEHGAVES
FLAGDLVWDFGDVKGVTTPFSSSTGGAGGKRFSGVDLKKVGKNGIVAPPLPTPAAPATSN
GANGAVGAAGKKAGAGGKNAKGAVAGAAVSDKEKKGKVLDGLRDDSLALRLARSLFVS