Protein Info for mRNA_2317 in Rhodosporidium toruloides IFO0880

Name: 10685
Annotation: K02264 COX5A cytochrome c oxidase subunit 5a

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 134 PF02284: COX5A" amino acids 33 to 131 (99 residues), 136 bits, see alignment E=2.2e-44

Best Hits

Swiss-Prot: 38% identical to COX5A_PANTR: Cytochrome c oxidase subunit 5A, mitochondrial (COX5A) from Pan troglodytes

KEGG orthology group: K02264, cytochrome c oxidase subunit Va [EC: 1.9.3.1] (inferred from 60% identity to uma:UM02477.1)

Predicted SEED Role

"Cytochrome c oxidase polypeptide Va, mitochondrial precursor (EC 1.9.3.1)" (EC 1.9.3.1)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 1.9.3.1

Use Curated BLAST to search for 1.9.3.1

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (134 amino acids)

>mRNA_2317 K02264 COX5A cytochrome c oxidase subunit 5a (Rhodosporidium toruloides IFO0880)
MQAFRTAARPLAFSARAVARPAALPVRYAHSAAESYDDFNARYADFFSNAQDLFELQRGL
NNCFSYDLVPSQRVVEEALRACRRVNDFSTAVRVYEGLKEKTENATQYKQYVDETKALRD
ELGILLKEELYGSK