Protein Info for mRNA_2324 in Rhodosporidium toruloides IFO0880

Name: 10692
Annotation: KOG1483 Zn2+ transporter ZNT1 and related Cd2+/Zn2+ transporters (cation diffusion facilitator superfamily)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 340 transmembrane" amino acids 24 to 46 (23 residues), see Phobius details amino acids 97 to 116 (20 residues), see Phobius details amino acids 128 to 151 (24 residues), see Phobius details amino acids 269 to 287 (19 residues), see Phobius details amino acids 302 to 321 (20 residues), see Phobius details TIGR01297: cation diffusion facilitator family transporter" amino acids 25 to 327 (303 residues), 88.6 bits, see alignment E=2.2e-29 PF01545: Cation_efflux" amino acids 26 to 324 (299 residues), 84.4 bits, see alignment E=4.6e-28

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (340 amino acids)

>mRNA_2324 KOG1483 Zn2+ transporter ZNT1 and related Cd2+/Zn2+ transporters (cation diffusion facilitator superfamily) (Rhodosporidium toruloides IFO0880)
MTRSAPPATHKSAAQVAREKEIKLIRICMAITAVMMVAEILVGYQLNVMSLVADSYHMMN
DLAAFVVQLYADELANVDRSHGTETSAFSFGFARVELIANLIQGTLLVALCLTLSLESLQ
RFYKTETVLLPPVGIGLGILALAWNIANIYFFEDAHSHGEHSLRKNRRSAQALVHPWTYR
ARLLQAAMDTPHSLARSVHSRRRGSTNSFYSPSHSHSHSHSQPSHSHSHSHDSSDDDSHS
GHSHAGGPGFRERFLMPQSALARHALGDAYGNVAIIIDGIASLLFGPKTARFSGLIKPWD
GVVYVDPICSLIVVRVILAHALPLGEPGFEVVSSFSVQTD