Protein Info for mRNA_2331 in Rhodosporidium toruloides IFO0880

Name: 10699
Annotation: HMMPfam-Amidohydrolase family-PF07969,SUPERFAMILY--SSF51338,SUPERFAMILY--SSF51556

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 658 transmembrane" amino acids 35 to 53 (19 residues), see Phobius details PF07969: Amidohydro_3" amino acids 137 to 648 (512 residues), 238.1 bits, see alignment E=3.1e-74

Best Hits

Predicted SEED Role

"FIG00840178: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (658 amino acids)

>mRNA_2331 HMMPfam-Amidohydrolase family-PF07969,SUPERFAMILY--SSF51338,SUPERFAMILY--SSF51556 (Rhodosporidium toruloides IFO0880)
MSLRHRKSVPDPAQASAAQSTPSSRRPPPTSSSSRLRILLFAAPLLLGWYLVSIRNAGVT
TLKQPPSRYAVCSPSGSKKAQIVTMDESEGERSLRVECIVVYEGRIVGRGTREEVRAEWG
DLETTGRGVRIFWLGKDETVLPGLIDAHAHVLQQGEAANSVDLVGATSVAEVVDRIAAFV
AADPELAKDRTKFVMGLGWDQTKFKETGGEFPTAAHLERDPRLAGRPIYLKRIDVHALWV
SPAVLALLPPDLPKVVPGGQIVRDATSGKPTGVFLDNAMDYINAVIPPWTSSSRLRFLLS
TSRSMLAHGLTGVHDAALAPADVRFLRDLDKEGKLPVRIYGMVGCVPTNAWCGDEDGVER
YDGERLTVRAAKIFTDGALGSWGAAMHKPYSDAPDKKGFLITEEPELRELMGKWVSKGFQ
LASHGIGDRANTVVLDIYESLLRNLTSEDGRDGADDAEVRKTQERVRWRVEHAQIMDIER
MGRLGIVASFQPTHATSDMGYAEQRIGSERIKGAYAWRSLLESGAPFALGSDFPVELVNP
FHGIYSAITRKWPNGDSPHGPGGWYPEERLTILEALRGFTTSAAYSSFSTSNQGMLRPLY
HADFVIVKGDPLELGTEREGETADERRTREHKLRETVVRTTVVGGRVMHGKGLLTECA