Protein Info for mRNA_2335 in Rhodosporidium toruloides IFO0880

Name: 10703
Annotation: K20098 ERCC6L2 DNA excision repair protein ERCC-6-like 2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1445 PF00176: SNF2_N" amino acids 647 to 970 (324 residues), 152.7 bits, see alignment E=1.7e-48 PF00271: Helicase_C" amino acids 1021 to 1134 (114 residues), 71 bits, see alignment E=1.6e-23

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1445 amino acids)

>mRNA_2335 K20098 ERCC6L2 DNA excision repair protein ERCC-6-like 2 (Rhodosporidium toruloides IFO0880)
MGTASSSKASTSSRPTPRSSPSPPRRRKKRSPPSSESEGGGGVGRRSRAGGSAGTSSSAE
SDFEKEARSEAKAEAAAVQLKEEKAKRRELVKDLKKRGEEIPAELKKPIKGKKQAKGAPA
MKPDAAAVFQLAKSKAALASKGKGRAVVPSSDSDDVGPKMTKPTLKKGAKLKEIGDKMGV
KVSKTGSDSEGADEVMNMMRETGDLTDDEDEVRRHLARRWVDTKHPHRMSARRKRLEMKY
NPLIRLLDIKITVVESGKHSDSNDERRQNKFGAALNTTDSDESSDASIETDWNSSGMGEF
NGRIAPARPLTVKAEPPSSSPPPYLKMALSDEDVKPVIARQQAVRGAIEDKKPIIELSDD
EEPSTQEDDADADMSEAKPLIRAPPSVPPARTNSSPAPRHKTEEIVVDDDLDSGAEPDTE
GSDVEFVAPKASLAPHFPAHVHQASQSSATSQLLTSVKTESQDRRQSFGSSQSQSQGARA
RSVSIKTESKVEEPDEMDEDVDEFTRGLLAAQAKRREAEDQKRKEERRRETQAKIADERK
KKMAKELEAQNSWREEEGDDEDEEVEEDELPIWEKSAREKEQSRMAWPQPVRKGRPKFLL
MSAAQANTGPHKLSNIPGDTAQVPAPINRFLRPYQREGAEFLYGQFKKGIGGILGDDMGL
GKTIQVIAFLSAVMNKTGFKKDDAGKRKDAINDLAADEPFKPTDLGLTCLIACPASVVGN
WQREFRTWGYFDVGIYGGPSSDKKAVLNRFDRGYLDVVIASIEGVRNNIDDFAARDFSIV
IVDEAHRVKNPKSNTTIALHRFPTPLRYGLTGTAIQNRLDEFWCILNWAVPKRVGTHSQW
NQLVSRPIKYAQQATATDDEIAVGRSRAVALAGKLLPHFWLRRTKESVKIQLPKKTDNIV
LCPLTALQKDVYKSLLNLEQVKIILTADDPCPCGSVDEKNERYKRGSCCDQKWTKLIFKY
ITLFAKVSNHLGLIYPDKEDKTTNPTKYEQDLEWARAAFPNDYEKRTPGPMAFLDPNLCG
KWTILCQLLEIWHSQGDKVLIFTMSLKIIDLLENLMQHTRYEYLVLDGSTPQEDRMPLVD
EFNDPHSEKFCFLISTRAGGVGLNLTAANRVVIFDPNWNPAHDLQAMDRAYRFGQTREVT
VYRLIGAGTLEELIYNRQQYKRSIANTSYDASAERRLFTGVEGEGKEQAGELWGVKNIFK
FNENMSLTEMSIRRADLTELEYALRNANLFDADDAKAAKVEEPDPDEVVAEITGYSAKAE
PTNTMTPEEAARHKLLLEEQAKIANILGGAFKVQSDATLGGSAIETLRGRHVIQTQGQAK
AAASHSASRASSAVPAKAQAKGKKRPSSAIVEDDDDSGWDPLARGRKKAAPGPSPSKKVK
KEAASLFSDFDLPSDVAIGAVLEAGGYRGSAGAQKLMSELNAMSGVGRRAKLESVVRAWR
VKKEE