Protein Info for mRNA_2340 in Rhodosporidium toruloides IFO0880

Name: 10708
Annotation: K06927 DPH6 diphthine-ammonia ligase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 238 TIGR00290: MJ0570-related uncharacterized domain" amino acids 1 to 235 (235 residues), 193.6 bits, see alignment E=2e-61 PF01902: Diphthami_syn_2" amino acids 96 to 228 (133 residues), 102.1 bits, see alignment E=1.7e-33

Best Hits

Swiss-Prot: 57% identical to DPH6_DANRE: Diphthine--ammonia ligase (dph6) from Danio rerio

KEGG orthology group: None (inferred from 57% identity to dre:503603)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (238 amino acids)

>mRNA_2340 K06927 DPH6 diphthine-ammonia ligase (Rhodosporidium toruloides IFO0880)
MKTVALLSGGKDSVYNLLHCVANGHEPVAVASLGPPAGKDELDSFMYQTVGHSGLATIAQ
ALDLPFFSRAIKGTAVNVGGEYGTREGKEKGKQKENDGDETEDLYELLKEVKEAMPLVQG
VSVGAILSNYQRVRVEHVCARLGLTPLAYLWERSQPELLREMVEAGMESVLVKVAGAGLQ
VEHLGKSLKDMEPTLHRLNKRYELHVCGEGGEYETFTLDCPLFKRHVNLIPSTSCANG