Protein Info for mRNA_2343 in Rhodosporidium toruloides IFO0880

Name: 10711
Annotation: HMMPfam-GPR1/FUN34/yaaH family-PF01184

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 279 transmembrane" amino acids 77 to 98 (22 residues), see Phobius details amino acids 104 to 129 (26 residues), see Phobius details amino acids 135 to 153 (19 residues), see Phobius details amino acids 172 to 190 (19 residues), see Phobius details amino acids 196 to 217 (22 residues), see Phobius details amino acids 229 to 254 (26 residues), see Phobius details PF01184: Gpr1_Fun34_YaaH" amino acids 64 to 268 (205 residues), 145.1 bits, see alignment E=1.2e-46

Best Hits

KEGG orthology group: None (inferred from 34% identity to afm:AFUA_5G01140)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (279 amino acids)

>mRNA_2343 HMMPfam-GPR1/FUN34/yaaH family-PF01184 (Rhodosporidium toruloides IFO0880)
MATHEMPPSEKTNSAHDALDLESGHGLNLLDSEGGASLRRQISVQLTAEQFERLYLQPGG
QKAKGDLAKRFANPTPLGLASFLLCLTPFSCYLMGWIGTTSAAAPTLVGAMYFMGGLGLT
VAGILEWVLGNTFSSVVFFTFGSFWLSFGFLLQPMQGVATELGATSVEYNGGIALYLIWW
ACLNGIYLIASLRTNVVFVALFAFLEVDFWLLSTIYIKLAKASANHLPGLLKAAGAFGFL
TTVCGWYLLVVLILDSTGWPIKLPVGDLSGFLVRKRRME