Protein Info for mRNA_2388 in Rhodosporidium toruloides IFO0880

Name: 10756
Annotation: K14781 DHR2 ATP-dependent RNA helicase DHR2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 787 PF00270: DEAD" amino acids 126 to 316 (191 residues), 35.3 bits, see alignment E=2e-12 PF00271: Helicase_C" amino acids 355 to 489 (135 residues), 48.3 bits, see alignment E=2.3e-16 PF04408: HA2" amino acids 552 to 641 (90 residues), 66.5 bits, see alignment E=5e-22 PF07717: OB_NTP_bind" amino acids 707 to 776 (70 residues), 47.5 bits, see alignment E=3.7e-16

Best Hits

Predicted SEED Role

"RNA helicase, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (787 amino acids)

>mRNA_2388 K14781 DHR2 ATP-dependent RNA helicase DHR2 (Rhodosporidium toruloides IFO0880)
MPSRIKFGSPEPADTPAAPPKPASPAPVAASPHKLDSLKRPPPNGATGSPAPPKKRKLVV
FDEEAEQEAKERANGASEASPQVNGSGSVKRRTTWGPEQKRKAKEEAQRLRPEREKLPVF
QGKDAILKGIAENDTVIVLAETGSGKTTQIPQYILRSEIPCAGPRIVCTQPRRVAAISLA
QRVSAECGTQTGGLVGYTVRFDNKTSRTTRLTYATDGALLAEMLGDRDLEAYDVVVLDEA
HERSLRTDMLMGFLKDIQKRRKEKVRAWKAEQAKSKGKGKANGVVANSDADGKKSAEERE
PTELKIIVMSATIDAKRFSDFFDRAPVLYVAGRQHKVKIHYAEEPQPDFLDAALKTVYQI
HTRYPPGSILVFLPGQEEIEGLAASIKSFLPSLQKEFPNAEELLVTPLYAKLHAAEQAKA
FLPSPPRTRKVILATNIAETSVTIQGVKYVIDCGLAKEKRYHAGTGIDSLVTESISQSSA
KQRAGRAGRETDGFCFRLYTEATYNGLEKRSQPEIQRVSLTFAILHLLALGQDDVFKFSF
MDPPDVESIKFALLTLIGLNALDKRGKITPLGRQMAQLPLDPVYARVLVASFVEGCPREI
IDLVSLLGSKDQLLINTSSTRDAANAARQKFVHRTGDHMMLLNILRAYEELDGKDERKQW
CKDNFISFKAMSSVLDARKQLLERAQRLKLGDPDASAGDEAEPVLNALIGGLFANTAFRQ
EDGSYRHTMTKQLVAIHPSSTLHGKKAPAIIYDELVLTTKTYARGVSSIEPSQIRSKAPS
LFGSSLK