Protein Info for mRNA_2394 in Rhodosporidium toruloides IFO0880

Name: 10762
Annotation: K03648 UNG, UDG uracil-DNA glycosylase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 341 TIGR00628: uracil-DNA glycosylase" amino acids 102 to 328 (227 residues), 256.4 bits, see alignment E=1.2e-80 PF03167: UDG" amino acids 157 to 324 (168 residues), 79.4 bits, see alignment E=1.5e-26

Best Hits

Predicted SEED Role

"Uracil-DNA glycosylase, family 1" in subsystem DNA Repair Base Excision

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (341 amino acids)

>mRNA_2394 K03648 UNG, UDG uracil-DNA glycosylase (Rhodosporidium toruloides IFO0880)
MTTKRQLGLAEAFLNAQQRVTTPPAKRPRLSAAAPLSTSATAAVAVATGQAGEAGAAETT
ASTSSTPSTSFPPSSLLSSLSSTGSSPTESDLLALECSTLHPSWLEHLRDEIRKPYFLDL
KRFLWKEGLKGEKDCEGGKLKVFPPARDVYAWSRYTPLQDVKVVILGQDPYHDDGQAHGL
CFSVRPGVKIPPSLRNIYKEIKEEYPAFDVPKHGNLISWARSGVLLLNTSLTVSPHKAGS
HSNRGWEDFTDKVIELVDKHAGAGENGEKGKGVVVLAWGAWAAKRVAKMDKKKHLILTSA
HPSPLSARRGFFGNSHFRKANEWLQQKYGRESHVALLPAPR