Protein Info for mRNA_2408 in Rhodosporidium toruloides IFO0880

Name: 10776
Annotation: K07975 K07975 Rho family, other

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 273 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details PF00025: Arf" amino acids 49 to 214 (166 residues), 24.3 bits, see alignment E=2.9e-09 TIGR00231: small GTP-binding protein domain" amino acids 49 to 213 (165 residues), 97.7 bits, see alignment E=3.1e-32 PF00071: Ras" amino acids 50 to 220 (171 residues), 175.7 bits, see alignment E=8.5e-56 PF08477: Roc" amino acids 50 to 164 (115 residues), 81.4 bits, see alignment E=9.9e-27

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (273 amino acids)

>mRNA_2408 K07975 K07975 Rho family, other (Rhodosporidium toruloides IFO0880)
MRSREAPSERLGSTLVALVHLLSLARSVSLPEQTGCAQMSYQPGGAFRRKLVIVGDGACG
KTSLLSVFAMGEFPRDYEPTIFDNYVAEIRLDGKAVQLALWDTAGQEDYERLRPLSYSKS
HVILIAFSLDTPDSLENVSVKWIEEVRELCGPNIPVLLVGCKRDLRDEAMRDGAGERGRF
VTTEQGQAMAQSIGARSYHECSALLNEGVDETFEAATRAAMLVRANPPSGGGGHHGGGGG
GLGDDGGHGKDLRTGSRRRDNDEGGGCCGCVIL