Protein Info for mRNA_2445 in Rhodosporidium toruloides IFO0880

Name: 10813
Annotation: HMMPfam-Protein of unknown function (DUF3533)-PF12051

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 458 transmembrane" amino acids 43 to 65 (23 residues), see Phobius details amino acids 75 to 95 (21 residues), see Phobius details amino acids 237 to 262 (26 residues), see Phobius details amino acids 277 to 301 (25 residues), see Phobius details amino acids 313 to 334 (22 residues), see Phobius details amino acids 341 to 362 (22 residues), see Phobius details amino acids 371 to 389 (19 residues), see Phobius details amino acids 400 to 418 (19 residues), see Phobius details PF12051: DUF3533" amino acids 49 to 410 (362 residues), 202 bits, see alignment E=7.7e-64

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (458 amino acids)

>mRNA_2445 HMMPfam-Protein of unknown function (DUF3533)-PF12051 (Rhodosporidium toruloides IFO0880)
MSGGIYDVEKARTDPAGASVAAGGGAGRPSQRPDPVRLALKKLIPAGSLFLPVFFITALW
MYGALYQTSQHAHNLNVLVIDFDGGSVGAALLAAVRSLNGQKTLPTFVIANASSITHDEA
LHTVFDGEYWGAVFATEGATNRFEAALAGGSAAAAYNASQGLEYSGLEVRYPSAWSGVVL
SALLRVLQTTAHIFNAQTVAPLLASGTALTPPAAQVVVNPLGSTYINLTPFSFGSRIVLN
TIGFVYPFLFQFFFLLALNGIFTTSGAYRNLSLKRHLTLRLCISIPWTLATSLCVASWAV
MFDESYDIKAKNFFALWAVLWIFSTITFDTFDILTTWVPPAFLAYLTINVIIMSVSAVIW
PIELANRFYRIHYVFPSHATWSTMITIFGNGTVNRLYRDLPILAAWLVVLKCGVVLSLRK
RAREGVAVAGGTAVAPPTQSAGERKAAPSARSLWDEEK