Protein Info for mRNA_2449 in Rhodosporidium toruloides IFO0880

Name: 10817
Annotation: KOG1343 Histone deacetylase complex, catalytic component HDA1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 353 PF00850: Hist_deacetyl" amino acids 28 to 344 (317 residues), 191.8 bits, see alignment E=1e-60

Best Hits

Predicted SEED Role

"Deacetylases, including yeast histone deacetylase and acetoin utilization protein" in subsystem Hydantoin metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Find the best match in UniProt

Protein Sequence (353 amino acids)

>mRNA_2449 KOG1343 Histone deacetylase complex, catalytic component HDA1 (Rhodosporidium toruloides IFO0880)
MLVFHTPLSLLHDPPHEILSGCVQPYFESPERYFRILTTLLKSTAFEERTLEWPVKEVVT
EEVLEAIRAVHDERYFAFLAEIYDEWVAEGGSKDAALPETFLRSDLLLEEGGIGSQKDGA
IARIGEPLLLRLVGTGHCESVHSSVPLLSRLDDASGADTRPPGHHATDTLCGGYCYLNSA
AISARHFQRSAKGDKPRVAILDIDYHHGNGTSKIFYDDPTVLYVSLHGSPDYPYYTGSEA
ERGGPNARGTNINYPLPLETDNEGYLTALEKATDNVRRFEPELMVVSLGVDTYIDDPLTN
FKVTLAAYPEMGRLIAQVGVKTLFVMEGGYYLDAIGDCVRGVLEGFEEEGGRS