Protein Info for mRNA_2472 in Rhodosporidium toruloides IFO0880

Name: 10840
Annotation: K07836 RAP1B Ras-related protein Rap-1B

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 188 TIGR00231: small GTP-binding protein domain" amino acids 1 to 159 (159 residues), 81.8 bits, see alignment E=2.4e-27 PF00071: Ras" amino acids 1 to 165 (165 residues), 157.4 bits, see alignment E=2.5e-50 PF08477: Roc" amino acids 2 to 118 (117 residues), 56.7 bits, see alignment E=3e-19

Best Hits

Swiss-Prot: 51% identical to RAP1B_DANRE: Ras-related protein Rap-1b (rap1b) from Danio rerio

KEGG orthology group: None (inferred from 53% identity to cim:CIMG_06722)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (188 amino acids)

>mRNA_2472 K07836 RAP1B Ras-related protein Rap-1B (Rhodosporidium toruloides IFO0880)
MGGGGVGKSALTVRYMHQIFVQSYDPTIEDSYRRNMTVDGITVSLEVLDTAGTEQFMSLS
NLYMRSGDGFLLVFSLTSMESISELHTIREQIQRVKEATAPPGKSQRVPLVLVGNKLDLL
SERQVGREVAVNLSKSWGGVPYYETSARKEINVNEIFEDVVRQMIKADHATPRRNRSNRP
AKRKCTIL