Protein Info for mRNA_2478 in Rhodosporidium toruloides IFO0880

Name: 10846
Annotation: K20293 COG6, COD2 conserved oligomeric Golgi complex subunit 6

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 736 PF06419: COG6" amino acids 93 to 164 (72 residues), 44.1 bits, see alignment E=4.8e-16 amino acids 183 to 733 (551 residues), 467.2 bits, see alignment E=3.9e-144

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (736 amino acids)

>mRNA_2478 K20293 COG6, COD2 conserved oligomeric Golgi complex subunit 6 (Rhodosporidium toruloides IFO0880)
MATAQPRPPLNTRRSSTLTFNSPGLSPGGNTSRPNNPLLHKVQRLLSANLEDSGTRAALD
TLGEQEDAEEVPKSTGGAANGAGVQGVGGALKRGGLRKEVEGKMAEGSREFLQAFSEVND
KLSMLQSHLDAMHVCCDEVQTELEKANTGTRYLLEHAEGLRQQRCVTFPSRFAADWLTSA
CRATAAVQQSLVHVFLTRFTLSNAELRALTSREVPVGPELFAAMDKTERIRADCRALLSG
EAGEGTQAGLDIMEYTAQHLEAGYTKIYKWLTFEARGFAKDVLEVSATVREAVSRLKSRP
EMLSEVLTILGTTRSTSILNLFLDALTRGGPNGLPRPIELHAHDPIRYIGDMLAWLHQAM
AGEREFLESLFGTKGDDEKVARRVGEVHALSRHRRVKTGVEGAEKARTDWDRIKKLLDKD
FEGCGRPLKIRVQQTIKSQESPIMAYRIATLIHFYKVTMERTIGEDALMSSVLGEIMDNA
YEAFFATLQAQGRSLLRFIQPPAAALSAPTQLRDVLSTLREIMSVYATSLLENESSTATT
LAKREEDFRDVLDAALDPALEMCGKMAEMRQAEWDRAVFWINCDESVLGTLEGYDFVGAR
RRAVEEDEAKYVDSLTAEHHSHLLKDSGLEAVVAALREKDAATPLSSLPPANSAAILAAQ
QAFTAFLSTVDPVSSPRLSLLPPHIAASIHADALRRVSEAYAEVWDAVADPANGYEGRDS
LLRRMKEEVRMLLGVQ