Protein Info for mRNA_2491 in Rhodosporidium toruloides IFO0880

Name: 10859
Annotation: K12837 U2AF2 splicing factor U2AF 65 kDa subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 610 TIGR01642: U2 snRNP auxilliary factor, large subunit, splicing factor" amino acids 60 to 604 (545 residues), 349 bits, see alignment E=2e-108 PF00076: RRM_1" amino acids 309 to 347 (39 residues), 20.9 bits, see alignment 1.3e-08 amino acids 382 to 451 (70 residues), 53.5 bits, see alignment E=8.9e-19

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (610 amino acids)

>mRNA_2491 K12837 U2AF2 splicing factor U2AF 65 kDa subunit (Rhodosporidium toruloides IFO0880)
MADQGAAFLDSVASDLPPSSRHGGDDGHHRSSRHDDRDRRDRDRDYHRRSRSPDGGRSSS
RRDRDREFERERDYDRDRRRSHRDRDRDYHERDYDRDRRGGGDRRGGGRYDDGFDRRGPP
PRGGDYYDDRRRGPPPRRGYSPPPPGGGRRRGRGGPTFEGFGAYDERGNRGRSPTPEDTI
PISKRKRQFTAWDVKAPGFESYTTTQAKMTGMFNLPGHTKPYLPPGVEGGDNPPLFYRPP
VFGAVGPGAPIGSQARQSRRLYVGNVGMEATEESVRDFFNSKMAESGLLSDGHLGEDLQG
LGLKGDKPVISVHLSYEKNYAFVEFRNAEEATNALGLDGIVYFNTALKVRRPKDYLGGDP
NEIAPHVPGVVSTNVPDTVNKIFIGGLPSYLTDDQVMELLKSFGELRAFNLVKEGGTGAS
KGFAFCEYVDPAVTDIACQGLNGMELGDRYLVVQRAAIGANPAKHGPPGSGIGFPDMPPG
AIPGLNQPPASILAAGEGGEGQPTRVLQVLNMVSVDELANDQDYEEIVEDIKEECGKYGT
VEDVRIPRPIKTATGKVDVKASESVKDLGKVLVLFEKEEQTTEALRAIAGRQFGGRLCIC
AYAPLEAVLE