Protein Info for mRNA_2496 in Rhodosporidium toruloides IFO0880

Name: 10864
Annotation: KOG0254 Predicted transporter (major facilitator superfamily)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 526 transmembrane" amino acids 27 to 46 (20 residues), see Phobius details amino acids 71 to 94 (24 residues), see Phobius details amino acids 104 to 124 (21 residues), see Phobius details amino acids 130 to 155 (26 residues), see Phobius details amino acids 167 to 193 (27 residues), see Phobius details amino acids 199 to 219 (21 residues), see Phobius details amino acids 288 to 310 (23 residues), see Phobius details amino acids 330 to 347 (18 residues), see Phobius details amino acids 355 to 375 (21 residues), see Phobius details amino acids 391 to 413 (23 residues), see Phobius details amino acids 425 to 442 (18 residues), see Phobius details amino acids 454 to 473 (20 residues), see Phobius details PF00083: Sugar_tr" amino acids 37 to 488 (452 residues), 242.5 bits, see alignment E=8.9e-76 PF07690: MFS_1" amino acids 38 to 437 (400 residues), 85.9 bits, see alignment E=2.7e-28

Best Hits

KEGG orthology group: None (inferred from 54% identity to scm:SCHCODRAFT_230318)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (526 amino acids)

>mRNA_2496 KOG0254 Predicted transporter (major facilitator superfamily) (Rhodosporidium toruloides IFO0880)
MAALRGQYRHIPNALHKPGVRWWEIRGLVKLNFFISVVFVGQAFNGFDDGLIGSFQAYPS
WHRALGYPSSSAIGLLNAAAYIAGLLTAPVAGYVADRWGRRWCVRYSAIAGLVATAIGAC
AGIDDASGQYAFFIVSRIIFGSGLAFCVVISPILLQELPHPSQRVIIAGLFNTNYAVGNF
IAAWLCFGCSYIKNDWSWRTVYIIQIIPALYLLLAIHFVPESPRWLMSKGREAEALDFLV
KYHGDGNPKDELVLFEFGEMKETLQKEKDLRQDTWREIVSRPGNRHRLYIVLLIVSCQNL
SGTAIIQYYYTHILKLVGITDTQQVTGLNAGLTFWVWLAAILGVYIVSRVKRRTLLLGAW
SALIVVNVAFTVTAAEYTRTGSAAAGRANIALLWLYDGAFFIVCGPLFFSYQAECLSYSM
RAKGMMLWGMVNKLISIFNAYVNSIALDEIGWKYYLVYTCILSIQLVGMYFLCVETSGLT
LEEISAVFDGPATAPTVDAGPFEAGLHEKKGDTHLARAADGDTLEK