Protein Info for mRNA_2508 in Rhodosporidium toruloides IFO0880

Name: 10876
Annotation: BLAST proteophosphoglycan ppg4 [Lichtheimia corymbifera JMR...

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1054 transmembrane" amino acids 213 to 230 (18 residues), see Phobius details amino acids 868 to 886 (19 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1054 amino acids)

>mRNA_2508 BLAST proteophosphoglycan ppg4 [Lichtheimia corymbifera JMR... (Rhodosporidium toruloides IFO0880)
MHPPAPNSISNSFSARRAALALSQSRPTYPASESVSDPLPWVQDEVASSSSRNTVGAGLG
GEDVSNTMRSTGLGISAPGGRGRSGISAVVDLDPQTDRENVPLPSAFPSTAYPPTTTTSA
DSPTKSPMHLRVDSPSHRSPSRPSSAQYPNASSPSRAFSSLISSFLPSRRRRAPSITSDL
STLQYPRSPSLLRPPPTVRHSAGRRTCLSPRRLILTLCAVSLLAILYASTVEEETRREKW
DAFRAKLSASKFSSADDSSRANAVNYGDMLDALRSGGNGHASHHPAGWGAAKEAVVVKPV
TVEVIEAPAVQVEEQDSAEPDDLGGSAAEPVRLIEVEKVDSRDGEEGDEADERRPKPHLA
VKVDKDDNTGSAAKEDEKPKPAKEDLPFLTDKSAPSTSDDSAEPDAEDEQAGLAAVVKQA
EQEDAKQEVEEEEVTESIEQVIEEEREAAPPVRVKTKQKEEEAPSNRVEKVVAVPLEAEA
KAKKAVEKALSNAAKKARRKKKKDASRYKRLLPLGAPPRRYLYGANFVIAADEVDASTVA
TNELTNEQIKIPSKKQLKKMFDNGKKRYLEEADDWRAYEWKAPPAHASLQRFVDRLKADE
RALRDWIKRVHASPPSQPVGLAAPVDALFTPASTDLALVGEPPIFDRGNRDKWTDLVLQA
QEGHAGKCKGAKWLDEYQKMHAEMLAGKREPKFISYHCETGMNCGGLGDRLLGMTSTFFF
GLITQRAFLSEWQSPIPLDIIFDSPHINWSHSSFTSSRHPVLGQKRLADAAADLDIIHFD
RLSVDATFGTTSWNPPKNRALTPGFELRDLAYKSPWIKFYTNRGMIYRSFKYKHLQKSIN
RLGLEPTTAFACISEYLFKPKPPALNLITQYTSVLALPTIFSVGIHIRTGDQSMRDEVYD
KVNTVKRHIAFFRCARELGETYARKDQKVVFFLITDSQHLKQDAQRVLGNKLITTDMVPQ
HVHQKSGHVDGVMSAVVEDWILAKADMLVATQDSGFGKLASFMMAKPNATVTIFPRFNPD
VMGLQSKKSHLRVDCTSPTVFTSFEELSSEWSLG