Protein Info for mRNA_2509 in Rhodosporidium toruloides IFO0880

Name: 10877
Annotation: HMMPfam-PI31 proteasome regulator-PF08577,HMMPfam-PI31 proteasome regulator N-terminal-PF11566

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 411 PF11566: PI31_Prot_N" amino acids 21 to 191 (171 residues), 119.1 bits, see alignment E=1.8e-38 PF08577: PI31_Prot_C" amino acids 273 to 357 (85 residues), 53 bits, see alignment E=6.5e-18

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (411 amino acids)

>mRNA_2509 HMMPfam-PI31 proteasome regulator-PF08577,HMMPfam-PI31 proteasome regulator N-terminal-PF11566 (Rhodosporidium toruloides IFO0880)
MSDPLAPDALVQLAHSLASPNAQLSTPAQALALVIHAIHSALSFRLVQPKPDAEADAGTD
EGQQQGEQSGQAGEEVKNRLPRDWPPEEGEGELKLKYRHEQSSMEFVVSVVDLGGRLLVA
GAAVNNPARSYTFDLVTTDYFSPTALSSSSPLSLSSLSPSLPFSAPNRFADLILLYRLNI
LQKLVPGLRKEGYTEVSERDAPRTGSGGASTSGGAGGAPRGGYLPDRGGPMGMFPPSNPS
PSRPTPSHPDSGTNDPLRIPFRSPPSHAPLADIGRRDLEPLGGLPGTFPRLPGFPGAPSL
GDPEAGGMLVGPNHPLFRDRFPPPEGGEGGEGRRWGGDGYLPPIGAPPGARFDPVGPGNG
PLFGGIGGQPGAGRGGGGMGRGGGGMGGVPRVHPDLERPGSNSEWHNSMFG