Protein Info for mRNA_2521 in Rhodosporidium toruloides IFO0880

Name: 10889
Annotation: BLAST beta-glucosidase 1 precursor [Aspergillus rambellii]

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 439 transmembrane" amino acids 81 to 102 (22 residues), see Phobius details amino acids 113 to 133 (21 residues), see Phobius details amino acids 173 to 195 (23 residues), see Phobius details amino acids 202 to 224 (23 residues), see Phobius details amino acids 287 to 306 (20 residues), see Phobius details amino acids 312 to 336 (25 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (439 amino acids)

>mRNA_2521 BLAST beta-glucosidase 1 precursor [Aspergillus rambellii] (Rhodosporidium toruloides IFO0880)
MATITVTAPPDDSDHPRSSLTSTSSTSAPSSHSPLHLAAPPPAHTQGRDRSASNATQPET
TILSPDRPPPLNFHFGWKGPLLYLVFLLVCNVLIPCLLYYLLRIYTRLDDKELIGIGSAA
LGVSSCFDAPVRLWKLLRHRAKYGPLYYPYMADPAFEPAGKNRLMRNISRSWWHLDFTMH
TYTLALFTFAIPLAIAPAIPLYNFFLLSFPMLVAPIMIVFGLTLRSWRSLRWWMSSDPPR
TPTKPAVYYILEDVGAVDFRLGREWRKRCQARYAASPPFRTMMWWQTLYWTFGMAVFIGA
TAAVDWTTDLQLGFGLCISLLFIWALPWSFLSYFLIHRSLLAERAWWKAHFREVVCRSLV
PHEGEGEKVGAGVESEGERRGGRTRGYSVHARLEAGPSLAGGEMREVERVTGSDLGGRVK
QEDGERENPSVVRGAAENV