Protein Info for mRNA_2534 in Rhodosporidium toruloides IFO0880

Name: 10902
Annotation: HMMPfam-Nucleotide-diphospho-sugar transferase-PF03407

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 870 transmembrane" amino acids 106 to 124 (19 residues), see Phobius details PF03407: Nucleotid_trans" amino acids 333 to 524 (192 residues), 28 bits, see alignment E=1e-10

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (870 amino acids)

>mRNA_2534 HMMPfam-Nucleotide-diphospho-sugar transferase-PF03407 (Rhodosporidium toruloides IFO0880)
MRGLQSLERLPLEQLVEQSRRSSRNSSWSSLLSRAHSPSAYSPLSDRTLANSPTSDDGKF
AWNPHRWGKDEVGEDDWEGRGARMGPGEGTVAERWMAWLAGRRSRRLVAVVTVAVVLIFG
TLASTHDTPLRPVVQAGAARTSSVLSAASKSVSSWFYRNRKTGEWKRPFIVEWDGNVTFE
RYLRDLDFIPFPMPLSPFLYATGKTREARNEKLPHRSYTAGSERNAVFLTLATAKYVPSI
QLWAARANDLGLPSDNVVVICLDDECLVDCEKRGVRAYGGFRQSVYGHRVPEIGVGGGVP
DLKRRSLDLAGKEERRFARVKREGFAGGLERRPLMQYVKFRALYELNAAGFASLFFEADT
SLTTDIFKFMRPLTLTFGDLQQPFDLLNSTLEDRRMRPSPYAHTPPLTMKLPASTLVDPG
WDLIFTQDGLHFVNFGWILSRPTPATIAFWRKCLTTYVARGGWDQGLVTEVIRESGWSMD
WRRGWWEEPSKDLGFQNKEDVSKLTGVFEPQKQEYLEQWHFATDLTGIQPREGLRIALLP
LKKFFAYHWWLARHYDPAADMVDPIVHHLTFVEFPIRQYWPKERGWHADLNGYYSRPRPI
LVPINATLIPRDRSTGPEPVMQYSADNPRGTFYYEDAPDFPESTFVGYMHEVLHYWRIMQ
LLAAVGDRPRAVAAESASKSLAKRSATSGEGRAWSVMLPKEAGIREHQNPPIWAWWSRIV
DVSNAVTADLDILEPAFFTHTEPYLSPADREEWQSNRIRVSLADYDSLPALVDSLRDILE
PYSPAPSSSSEPGFFSWMSSSSSEVDPPPMGVVVELTDWDATLDWKLDDLSASERAPDVK
FKEWEDLKKTRHCQKWWEPLIPGGWCTPQE