Protein Info for mRNA_2536 in Rhodosporidium toruloides IFO0880

Name: 10904
Annotation: K15601 KDM3 lysine-specific demethylase 3

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 942 PF02373: JmjC" amino acids 768 to 864 (97 residues), 43.4 bits, see alignment E=2.1e-15

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (942 amino acids)

>mRNA_2536 K15601 KDM3 lysine-specific demethylase 3 (Rhodosporidium toruloides IFO0880)
MGAGAYTVTPFGPLTDSSSRPPASLSFPPPPASLSFDSVQPPPSSRPATASKRPLRRSSV
ANGDATDPAADSSTSQSSAAQSSKRRRVSPLSQNGASASSSSGSKSGRKSIEHSFELEIP
VRPKSSTSKQNGAKVEGSGASTKVETKVEEEKLEQAPAPAVPTRTSSRKSRLRPSLATEG
PEDIAISVENAAEDVKGKGKELVEEPAEPELTPEQAADLEEAKNGKYGYILQASYCTSRA
LANPCRNVLPLVSRCQDCTSKQTAYTCAFQSVRSFPLSAPEDQGGEPLPYPVFLDTTAVD
DTPELPTLFDRPFTIVEATLLRSACSTNLLPTLHRELEHANQPNSARTRLALGVTHTCDG
CAASILCGSWICTTCAREYCLECFDALKTLDQAAVEAVPLWGHSQFLEPIGGLHIGAIEK
LTRCVKSRHLPGKADRAIRQGPFVPLTRMDRLELRRLVDEMELWGKQHPLPPPKELPMNW
LQQHRFDPGAKENSWPYLRFPGDILPPKLDEGSPLILQESQPAKDATEKEGKAMYPDSMH
QAVPPPPPTLNMANATASLASTSSSTLPSYRSNTPPPSLADLTQHDLFRSLWSLGEPLLI
DLAPENYPSLPWTPDYFIEQFGNEVCRIGSTRVIAKTKDGEREKERNGTVGAFFATFGQE
RDTGDVEKIKDWPSTNDFRSAYPELWEDFMSILPAGSVTRRDGVLDIAAHTPRNANPPDL
GPKGYFAQASDDRKGAKGTTKLHSDVADAVNIMLWTSDGPDGSPGVAVWDLYKAEDAETI
RQFLYEHIAKKEGLTVDEAIKRFDDPIHTQKFFLDVDMRKQLYMSTGVKSFRIHQRPNQA
VFIPAGCAHQVCNKADCIKVATDFVSVENVARCWKVSNEFREQIKDKFLWRSDVLQLKSM
LLWAWRSAERFEPPGGSTGETTANNRSGAVQVGGSDKMNVEA