Protein Info for mRNA_2544 in Rhodosporidium toruloides IFO0880

Name: 10912
Annotation: K00046 idnO gluconate 5-dehydrogenase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 268 PF00106: adh_short" amino acids 10 to 213 (204 residues), 127.2 bits, see alignment E=8.5e-41 PF08659: KR" amino acids 11 to 118 (108 residues), 26.3 bits, see alignment E=9.8e-10 PF13561: adh_short_C2" amino acids 16 to 261 (246 residues), 135.8 bits, see alignment E=2.7e-43

Best Hits

KEGG orthology group: None (inferred from 63% identity to ani:AN5637.2)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (268 amino acids)

>mRNA_2544 K00046 idnO gluconate 5-dehydrogenase (Rhodosporidium toruloides IFO0880)
MADLFSVKDKVVLVTGGAKGVGWGITNGYMRAGAARVYIASRDEKSLKQAADEFNSQGYP
GKCVPLVANLATYDGVVGLVAELEKREKCLHVLVNNSGNNWGAPFDEYPDSAWERVLTLN
LRRVFTLTQKLTPLMLKSLGGKEEGPWADPARVIMIGSVDGIRVPTLETYAYSSSKAALH
QLSRVLASQLGKRGITCNTLACGPFQSKMMAATLEAGRDHIISGVPLHRIGEPDDVAGAC
IFLSSKAGSYVNGATIALDGGSLVAGKL