Protein Info for mRNA_2548 in Rhodosporidium toruloides IFO0880

Name: 10916
Annotation: KOG1943 Beta-tubulin folding cofactor D

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1144 transmembrane" amino acids 155 to 173 (19 residues), see Phobius details amino acids 238 to 258 (21 residues), see Phobius details amino acids 976 to 989 (14 residues), see Phobius details PF12612: TFCD_C" amino acids 854 to 1047 (194 residues), 100.9 bits, see alignment E=4.1e-33

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1144 amino acids)

>mRNA_2548 KOG1943 Beta-tubulin folding cofactor D (Rhodosporidium toruloides IFO0880)
MSTGDDDAPAQTAFARTDEFLRDVARLTDLDFGSEASREEEREEQAALGQLCTVLDDYQE
QSYLLDPSLETLVSPLLASLREQVRRQGSQLGGKRVERVAKILYWFTKVRGPKTIVRFFP
HEVTDLAVLVQLLSADPDAPSTSSTPLHSSTSWELRYILLLWLSVCIRLPFTLSRLSPGT
TDAIEALGLKWLERSGKEADGAAEVLGRYFARNDVDVARLLGWCEDALQSSPEKQKTVYP
LLTALLLVLSTASPAHLLPHFPRLYALLALMPAPDDGRVGANLARCRAKFAGRIAMLRLQ
VETKDSGGEDVPEEVEVIVGELIEGLAHPDSIPRYSSAKYLARLSLLLPPSFASQILDAI
LTSFEEALAEGSTARGEGRAQGACLAVGEMARRSVLNRLETEERDEVVKRILDCTLQALN
YDHLTALHSIGTSVRDSASYVLWSLSRTLPSSSLSADQAQQLAERLVCTACLDREVSVRR
AASAAWQEAVGRWGIFPHGISVLRLVDFFTVSVRHRAFLQAAVGVATYHEYRPALVSHLL
GRPASSSSSGTGITHYDAEIRSLSAQALEAVVEGAADELAERLIEEQVKKLEEVKKNVGR
LHGVLLSLAHLAKATHALPSSRQAEELKALVCEAVCNLHPSTRSLKSNQLVLSAALSALA
SSAPDSAIDATSLHLPPNWFDIVHLACDRSEQDVHDKAGEAIAAVSKAIDCRQQVDSLLA
DLDSRSGTRQQAAVLLLGQIDYSAAHANDEKLATVRRRLVDFVQRDGLRKATTIEGRRNG
VDALAAILLRHGDAEDLASLLDPVLSALQLGFTDYTSDQRGDVGSWVRISTLNAWASLIP
SFYPSRLDRQMADQLVSKMVKLCLERLDNVREAAGTALLSLWRWQSGTDGEGAGVLRGEE
VWRAIAAEERRNWRDLDWSSERILPLLRVVEYRADLLEGAVLSMSQFSSSTAFVDFCLSL
PALPPASAEFDDPASYSLLSLLSSLLVLGKTHFSSNRIFVPLLSTLASLAEAGCLDEVAA
EEAGEGGKVLRDLVGVAFNGVGKMKSSARLTGAMKVVIAFLPLPHVGPTVAARLHLFLAH
PQAWLRQQTADELFGALAAIGSEDEELSAMLAETSWASLSQDKATEKGRAIGEQVKAAVE
LLGA