Protein Info for mRNA_2553 in Rhodosporidium toruloides IFO0880

Name: 10921
Annotation: KOG2466 Uridine permease/thiamine transporter/allantoin transport

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 567 transmembrane" amino acids 34 to 54 (21 residues), see Phobius details amino acids 66 to 85 (20 residues), see Phobius details amino acids 149 to 167 (19 residues), see Phobius details amino acids 179 to 201 (23 residues), see Phobius details amino acids 208 to 232 (25 residues), see Phobius details amino acids 253 to 272 (20 residues), see Phobius details amino acids 291 to 317 (27 residues), see Phobius details amino acids 341 to 363 (23 residues), see Phobius details amino acids 383 to 400 (18 residues), see Phobius details amino acids 406 to 431 (26 residues), see Phobius details amino acids 454 to 477 (24 residues), see Phobius details amino acids 491 to 511 (21 residues), see Phobius details PF02133: Transp_cyt_pur" amino acids 28 to 135 (108 residues), 81.5 bits, see alignment E=3e-27 amino acids 155 to 491 (337 residues), 191.2 bits, see alignment E=1.5e-60

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (567 amino acids)

>mRNA_2553 KOG2466 Uridine permease/thiamine transporter/allantoin transport (Rhodosporidium toruloides IFO0880)
MGLLRRLEVPAAEGAERALDNEDLRSTPIERRTWGKLFFGLFWFSAVTNVSNWLGGSSWL
ALGVSFWQGLGCTTTGFFIVSFWMVGCGRPGAKYGVPYPVICRSSFGVLGAGWPAFNRAV
MATVWQSINSASGAQGKCFLPSLRACPDLSWPFAALYICLYAIFPTIRNIPNHMGTESAL
TSAEMLCFFLYLLLNAAMLLLDVPKWAALVYSKVAVFCISSAGMLALAITKAGGSVGPVV
SQPSTVHGPAKSWLLLQMILTSTASCSTFASNAADWQRNAKRPNDPILGQILGFPISNFI
VQVVGMLVASTSASVYGEVVWNPVTYLKMLLEDNYDAKHRAGAFFIAAGFVYSLLFSCVF
ENIYCCGNDLASLFPKYISVKRGFWICLLGCAAFCPWYLLGTASRFITVLASYQIFLFSI
CGLIMSDYFLVSKGLFNYRDLYTLSKKGTYYYSYGFNWRAFAAYGVGVAINFAGFLNNLG
IIHNHRLARSYWFSIFTTTFAAGGVYYILVRLFPQPNYNAKWSEPKGVWVPPEPNGAALT
DSAMDEAESMEKKDEVVAGVLPVLEHA