Protein Info for mRNA_2559 in Rhodosporidium toruloides IFO0880

Name: 10927
Annotation: HMMPfam-Translin family-PF01997,SUPERFAMILY--SSF74784

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 257 PF01997: Translin" amino acids 23 to 218 (196 residues), 165.7 bits, see alignment E=7.4e-53

Best Hits

KEGG orthology group: None (inferred from 44% identity to cci:CC1G_02925)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (257 amino acids)

>mRNA_2559 HMMPfam-Translin family-PF01997,SUPERFAMILY--SSF74784 (Rhodosporidium toruloides IFO0880)
LIAQMAAVDFSYLQDALAKDAELRERVREATREIEQAERACLAVLGRVHSHSREDTPALV
ASLDPTLPALRTALAKLADLIPPQQFYRYSDSFSRCIQQASYIVVFRVFLEREDVATKEE
VAQQLGSESAHSDHFFLSTEEYLHSLISLVNELSRLAINRVTLGDYAAPVQYSRFAKELS
NAFGLLNLKNDSLRKRFDSIKYDVKRLEEVVYDLSLRGLLPKPDPTAAAPASTDAAADGE
RAAKRQKQGEGEMAMET