Protein Info for mRNA_2579 in Rhodosporidium toruloides IFO0880

Name: 10947
Annotation: K10597 UBE4B, UFD2 ubiquitin conjugation factor E4 B

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1112 PF10408: Ufd2P_core" amino acids 379 to 1009 (631 residues), 713.9 bits, see alignment E=2.1e-218 PF04564: U-box" amino acids 1024 to 1095 (72 residues), 88.3 bits, see alignment 3e-29

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1112 amino acids)

>mRNA_2579 K10597 UBE4B, UFD2 ubiquitin conjugation factor E4 B (Rhodosporidium toruloides IFO0880)
MAEPSPASDADKIRLKRLAKLQQQQERQSTEQQEPVASTSGTTTKPPAPTSRPPVPAARP
ELVKPAPSAVPAAKAPRIATPQQSQPLRFTDSFEEWQHGCIGRTLNVTLDVAAAEASSWS
VVYLKDVAVELDEEDPTSPRPHKLRADLADRLLLSRLSLSPSNLVEDPERITVVAALPQN
ETSFEYLGSCWRRERTERSRVVAKKDSDPQEVQRRLDVLNQLKGLLVSYIGLVLMDPSMF
PQDHVSGKTLGALELEPLLIPSSTSIPPAQLQVGDAPSVLADLALRFTPSAANDFEGGIE
EILGPLFAKWNAHLLVNKLDIGGGGAPGSGSLGWRDIVQAVQNLTEIKPIATALTTFSNW
NVASEPGASAPVLEYKSLLGPLMRLSSFPDGAPSLPQSYFPEPSTMMRGNIDSASASLRC
TLRGVQTSLFRILDNTVRSSPAAREAVLAYLGQTAVLNAKRAAMRADPNTVSTEGFVINL
HAVLVRFAEPFMDASFSKIDKIDPLYYKQSSRVDVAEDTKINANKQESDEYYTKDSAAST
SVPNFISEIFFLCAQYLHIGPMHAVKEHKGIGQQVSHMQRQLNDMEADSTWRGTPQEAAT
KAGIERYKKKIEQWRSFVLAYEVQLLDPDYLAKCASFANLVMAWLVRLVDPKKQHPHVRI
DLPLPSETPLAFRMLPEFLIEDITEFLSFTSKYAPQVLETSSQDELMSFMLVFLSTPYMK
NPYLKGQFVEIMYYLSRPTYTSPRGCLGDVLNFHQLALKNLMPCLIHAYIEIEITGSHTQ
FYDKFNIRYYITQLFKLVWSNPTHREALKRESQVNFDRYVRFVNLLMNDTTYLLDDALVH
LGKIGELQRAMDDQSAWEALPASERQEKEKLLRQYESTVRSDLDLGHESLRLLKLFSQET
TQPFLTREIADRLAAMLDANLQLLAGPRCQELKVKEPEKYKFRPKGLLSDVLQIFLNLGP
HEQFQAAVAKDGRSYSKELFQRAMRIATKTAIKTEEELKDLSRMVEKVEAIRAAEQEDEA
MGEIPDEYLDPLTFEIMEDPVMLPSSHTILDRSTIKQHYLSDATDPFNRQPLKWEDITDA
VELREQIEQYLAERRKKKGSAASAGDRMQVDG