Protein Info for mRNA_2583 in Rhodosporidium toruloides IFO0880

Name: 10951
Annotation: K10610 DDB1 DNA damage-binding protein 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1149 PF10433: MMS1_N" amino acids 75 to 583 (509 residues), 210.9 bits, see alignment E=3.3e-66 PF03178: CPSF_A" amino acids 794 to 1112 (319 residues), 166.6 bits, see alignment E=9.2e-53

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1149 amino acids)

>mRNA_2583 K10610 DDB1 DNA damage-binding protein 1 (Rhodosporidium toruloides IFO0880)
MLYAATTQQATAQLGALRCAFFEPSQDCLVVNKLNRLEFSSIEDDAVNPLLEVPLFSTIA
SMQSVHLPGQATASLVVLTTCLRLFALVHDPTSPYNVKTVASVSIAEPFGRLAEYQDILV
DPANRCLLVHAYAGLVRVVPFFIGDTPAQRGSRTATRLAGSPHGSPLDFSYSYNVRLPIL
NVASLAIVASSADDPPILAGIHIEHTGTRTLSTFAISLKDKDLCEGPVAAFALADPGSEL
VLPVNEANAPGILVAGEETVTWVSLEERNGASSTASKGKGRAASQMLVSCRLPVARITAW
SWRNNDRLLLGDIYGKLFEVNLRRAENGVVSGISAQDVGDAASASAIVPLGATTVYLASR
FGDSQIVRFVSGEDEGMAGPAELALVDSISNIAPIVDLCIVSAHGQAANYAVTCSGAYKT
GSLRVIRRGVGLSELAALEADGVQQAWSLTSPAPSTEPILVLGFFSETRVFRMSAGDPAG
AEAVQIDEMDLQLFASPGPTIFAGNVGSMLVRVTAEAVMYASDRGEESWKATSAGKITAA
AAAGGDHLVLAFDGGFLQLLKAKNGTFTESGNIAFEHDIASVSLAETSAGAFAVVGLWTS
QAVHLVGIPDLAVYASQKITSTFLIRSAALINFGDGDYTLFVGLGDGTLASYRVDLAAPA
VIDSTGKMIALGRRPLLLSEIGPESAKVLLAVSDRPTVISKARDRLNYSSVTLTGVSSVA
NISHPALGDLVALVSREGVQIGRMDTVQKVDVRTVPLAEDEPRRIVYDPVSRKFCVACSR
RDIDRHTGQQAVTSVVRLVSEDSFETSSVFELERGEEAQSLALVESQGVRYYVVGTVKLD
SATPEPTDGRLVVISVSEAGNLRQVSSARLGGCPYALVALSDGLLASAVNSQVAVWTIDS
EGALALKSTWSGAFVAYTLARAPDDTLIVGDALRSLTVLRYTASPQPKLLEVAKDYRSRY
MVGVEDLGRDSTGADRYIGAETDLNLFAVSRHPQQAAGNLANAATLQDAGAFHLGELVTR
FRTGSLGDLIGDANTTVVPRLVYSTSAGTIGVIADLDAASSRILSDLERNMREFVKGVGG
LEQEEYRAFKADKVKTPSTGFIDGDFVQSFLDLSKDVQEQVMQGKSEHERLTVDKAEIVR
LLEEVARVH