Protein Info for mRNA_2592 in Rhodosporidium toruloides IFO0880

Name: 10960
Annotation: HMMPfam-Protein of unknown function (DUF1762)-PF08574

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 481 PF08574: Iwr1" amino acids 343 to 436 (94 residues), 47.3 bits, see alignment E=1.7e-16

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (481 amino acids)

>mRNA_2592 HMMPfam-Protein of unknown function (DUF1762)-PF08574 (Rhodosporidium toruloides IFO0880)
MSHEEGRQADIAILRIKRKRTHQPQPLDALVFDHAEPSAKRRRSDRANKEAAQGSGAAPR
GIFRFAETVPIDSFSTPSKTRSLRDRIQSFLAHPPPALSRHASSSSLRSAAIRTGPSTPQ
SPHTASTPDSPNPHPTPTRRKLPSALRALREASASSPSDASPAIAQDAESRVSQVHAQAR
LHRYRIIEKRRAGFDAGSDAAQAAEQRRLRQERRQEDDEIRRGLRPPRVLTTRDLRKKSD
DEEPGTHSGSPDAAGLRIYDAIEEGEERTSSARLPGHGSKGEPKAEDDRMAMDQFGDMLK
EYLTLQESITPSDHHTHHTQPDPTTLQPASSLLESSRTGDSDDDFVYDVYYRDTSTALAA
SATSVLQTGEGGWDVSSLSGLRRIGQLAGMQDLSDDEEGSLLVHENDVDPSSDEEDLADQ
DSNEENDYRNDYPSDEDPASDNFESPAASVPLGWREKRNGADWDSGGDDSDDSDEEAGWS
D