Protein Info for mRNA_2595 in Rhodosporidium toruloides IFO0880

Name: 10963
Annotation: K14012 SHP1, UBX1, NSFL1C UBX domain-containing protein 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 481 PF14555: UBA_4" amino acids 5 to 45 (41 residues), 46.1 bits, see alignment 5.2e-16 PF08059: SEP" amino acids 258 to 331 (74 residues), 69.8 bits, see alignment E=3.8e-23 PF00789: UBX" amino acids 418 to 478 (61 residues), 40.4 bits, see alignment E=4.2e-14

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (481 amino acids)

>mRNA_2595 K14012 SHP1, UBX1, NSFL1C UBX domain-containing protein 1 (Rhodosporidium toruloides IFO0880)
MASEQEKLAQIASITGCSLNQASFFLESAGGDVEAAVAAFFDNPQGDDDAAEEAPAQLVS
ESSQQAAAPAPQLAQPSAQATQPSGAYTLSGAPVDPLPAGWGQRNSASSSRSATPSNPMR
STGGPRITGFRDLASSSAGPSFPPSGDDDDDDDDDEGRDPTHFFAGGAKSGLSVENPDDQ
RRGGVGGMLRDILQQAREGSRRLAGGGDAEEQPRSSFFTGSAHTLGSDETPSTYIPDPNA
KEEDEDEDEEEEVAIRHLTFWQDGFSIDDGDLMRYEDHRELLAAIQAGRAPISFLKVKHD
QPVELRIAERRNEKWTRQAPQPSGPFTGSGNRLGSGSPFPESSPAPSPAPATSGSTRLFS
GLIGNPKAPDAPVSGEVQFEVDRNEPTTQVQIRLRNGERYARLARLAGSSEEWTCAHRMV
ATFNHTHTVGDIRRYINASRPGEASSSYVLQTTFPSRDLTDDSQTIKDAGLMGSVVVQRP
V