Protein Info for mRNA_2615 in Rhodosporidium toruloides IFO0880

Name: 10983
Annotation: K14775 UTP30, RSL1D1 ribosome biogenesis protein UTP30

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 389 signal peptide" amino acids 1 to 15 (15 residues), see Phobius details PF00687: Ribosomal_L1" amino acids 55 to 270 (216 residues), 175.2 bits, see alignment E=7.6e-56

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (389 amino acids)

>mRNA_2615 K14775 UTP30, RSL1D1 ribosome biogenesis protein UTP30 (Rhodosporidium toruloides IFO0880)
MAAIATVTSTSSTSQAPPPLWKPASVAPRQLPSLPARADIPVSSAQCEKALNALLKHVEK
VQEKRGEEELLGEQEEKVFLVVGLKQAPKRETHKPVRIPVPHPVMNPRESPVTLFVKDPQ
REYKDLIASSNIGFISRVVGLDKLRKKHKTYEAKRQLLKEADLFLVDDRVMVDVGKCLGK
MWRDAKKQPIPVTIQRKDLKAELERAIASTYMNVTTGTALSIKIGTTDLHSASDLLANLD
AVLPYIASRIPQAPASFSNIQSLHLKTSTSTSLPIYNAPLSERFEGTGLTAEQEKERAEK
LEKKKADKEERRKREEEREARKKERSATKDGQGRFEKKRERDEEEGEESVEAAAEEQALE
AKEPEAKKAKKAAAAPSAGKKASAKKAKA