Protein Info for mRNA_2625 in Rhodosporidium toruloides IFO0880

Name: 10993
Annotation: K20784 XEG113 arabinosyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 944 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details PF03407: Nucleotid_trans" amino acids 382 to 590 (209 residues), 121.7 bits, see alignment E=4.5e-39

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (944 amino acids)

>mRNA_2625 K20784 XEG113 arabinosyltransferase (Rhodosporidium toruloides IFO0880)
MQPAYRRRWTLIALCILVATILQYRRASSDHPPALDAAAAQLAVVMPFTAGDAPKVAANL
RLWDDFPPCLRSLSHPKPSFYFYANKLPSNQLTSEVNTAVAALPSSVKRCFQDFHLINAE
IPPELDHYDPDARDSSWVAGPNEQFYQLMSGNLTAPGTTHIFMMEPDTRPVQPGWLNQLA
KVVAESEPFWVRGSAFRPDCAQRKTSHTNAADDCHQLGAEIADHINGNALYNIGDPAFGE
FLDAVRASTFGKWPFDLAWMRYIRSPEKEALRRRVLKNFVYTDLIQNLGPQSFALHVFRR
DNPWTFFVHSDAAGHNGTEPLDLSGSKELVLSPLADNPLQRTLLPALKLVANSKTNNVML
AFGTSNYLDLVRNFVHFVREAGIDNFVLIAMDADTVAWAEEEKVPYYSYIDEEVATLGGS
DSYKSDGFRRVVNRRCSVISTALRGGFNILQSDLDVIWVKNPFPYFFNGDYEYEIQSDGR
RGFTERDPAAPFRDFVNSGLFYARGTPRMADFYDILIRTVAENPHRREQHLLNTILQENV
LRIHYRILDPTLFPNGFQYFARALPTRAGVEPFCIHNNWVDGKYTKEYRFREIGMWTQDP
PEYYDTTERKYLAFYDPSTPNNGWNNQRNSLRAALAIAKILGRTLILPHFYSHHGKPVVV
TLDYFLDYDTFSTTFPDFRESYFLDLVFPDPPERIFHIDIGPSSLGPLPKGVPLVTFKAK
GEYRGATDREIETWFEPYQDEPLIRLSSAFRRFHKFVDPVENKAFNDLLYTGLTPAPFIR
NTASFIAKKLTEAAEQKHGSPKFNCAHIRRGDFPSVHKGEKTTKELAQMLGTMMDKDRVT
YITSDESGSYPFRDVFRQQFPQVHFWPEYNRPWFEHLYDDELGESMRVGAVEQRVCAWAD
KFVGNIYSTFTTHVCYLRTQLGRTGDSVCPDIYGRKYPADWDFY