Protein Info for mRNA_2633 in Rhodosporidium toruloides IFO0880

Name: 11001
Annotation: HMMPfam-Nucleotidyl transferase-PF00483,SUPERFAMILY--SSF53448,SUPERFAMILY--SSF56112,SUPERFAMILY--SSF56784

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 729 transmembrane" amino acids 692 to 708 (17 residues), see Phobius details PF00483: NTP_transferase" amino acids 20 to 203 (184 residues), 26 bits, see alignment E=7e-10

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (729 amino acids)

>mRNA_2633 HMMPfam-Nucleotidyl transferase-PF00483,SUPERFAMILY--SSF53448,SUPERFAMILY--SSF56112,SUPERFAMILY--SSF56784 (Rhodosporidium toruloides IFO0880)
MSNGGVRNGNAAKGDALSVVIPIGGVGSRFAKEGYRFPKPLINIAGRAMLFWIIDRLELT
ENDSLFIAISDMVNDEFHLDSQLRREYPHLNVKLIPLRFDTRGAAETLFIVAQSMTDDEL
QRRTVSLDCDTIYFPEARLLSRIRTLPPHHGATVVFDDAGDPPVFSYVETDSRNRIVDIK
EKIAISRHANTGAYVFPDGFSLRQRCAAFLDQPLKSLALGEYYTSSLIADMIGAGFTFVA
LPIPNSSFACVGTPPQLNEFLKTISQKQDLVKPFSSLTQATQRRRFCWDLDSLVTPPCVF
GDYRTVKPIRRNIELVRQLHAAGHCIIISTSRGMQQHDGNVNAAVADNAAVTLATLAKLE
IPYDEIQFGKPYAHCYVDSRAVNSLLDTQKEIGWYAASGASRWSGKGSTGGMLVPRSFNA
VQVIENAVVKSSTSEAILGEIYFFSRIPTDIKDVFPAINTLNFVPSTQSFSLTMQRVHGV
TFSHLLVGRALTVGRLEKFLAALSRIHSSNGIVDDHISVPPSLAARLNALGESPNRNVDI
YANYAAKVSERYKAFLPVYQDLGDDHEAIASRLLAFLQDFEADDRAQASHVIHGDPVFSN
ALFTKDNTVVFIDVRGRQGDVLTLRGDALYDLAKVYQSLQGYDFALLADPISAQTAELVD
LVSPVDRRLLQDLQGVFWAFVKKHYTVDRRDLILVTASLLFSLIPLHDPPMRRLFYKMCK
AVMAQVRKG