Protein Info for mRNA_2650 in Rhodosporidium toruloides IFO0880

Name: 11018
Annotation: BLAST Plasma membrane fusion protein PRM1 [Grifola frondosa]

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 958 transmembrane" amino acids 41 to 61 (21 residues), see Phobius details amino acids 69 to 90 (22 residues), see Phobius details amino acids 111 to 128 (18 residues), see Phobius details amino acids 134 to 150 (17 residues), see Phobius details amino acids 299 to 321 (23 residues), see Phobius details amino acids 391 to 409 (19 residues), see Phobius details amino acids 416 to 436 (21 residues), see Phobius details amino acids 613 to 635 (23 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (958 amino acids)

>mRNA_2650 BLAST Plasma membrane fusion protein PRM1 [Grifola frondosa] (Rhodosporidium toruloides IFO0880)
MTTYSPSYSIHLPPSYPLRPVLRPFLGPRAHISLSWLSQEFLALILLLIALAFLLASLPA
LTRDAKASLLSACTGVEGAASVAVSLPHYIADGVNELNVRTVNAVTHGLGEVLDLMLQAL
EAIVLFIIDTYRSLYLCLLDLAVHGSITVLVKGIEEAQGFVTDAISGVRTAIQASIGGIE
TALNKTVGLIDKIPGVDISLPSLDVPELSALENVTLPDTLVNALTSLNSSIPTLSEFRST
LDDLISKPIESLRANINGTLSNSTIDVELLPIPPKQTVELCTDLDTSWIDDVGTDLGKFV
KVAIGLVVLVMALFIIANALWEKWRYRVFLGGVEAAREAWLNDLLSAASSVAPEAKSQTA
HETLSTTNLLSFLNASSHPTLFRHVSRLASLLRLSSSSSRANLIWFLSYIAHPPAWAFLA
LGLVGLIVVQIQLAILDGPIRRMVRRRAEDGAGQFSSSVMGALNEKMRDASESWANGTNK
VILGLQDDVNNNLFGWVNDTTTSLNSTMNGFYSEITDTITKIFNGTVLEDPALNLIYCLL
GSKVDSISTALTWLHNHAHLSLPTVSPSALLLSQNRTDDLTATLTNPNSSISAPSIAEKM
VNAYERNLEQQRLGFIVAIGVWVLVVLMGLFGAWWRARGALWWANRRGGSRGGKDEPNEK
VEPFGQDEEKSAFFKPLHLRSMSSFGRRGAPYGASTSSLDLHTPPAPTTAPPPPPPSFAE
KPFFSPAEQLAVPPRGVSPSARSWASLIDYFKQTPDQHDQPASNPYNDPSAPSTRSPPRT
LALPALSALRLPRVTPPSLPSKRDGSKLKPLISRPRPISAFRNLRDSHLARKREKLGRRR
RSDLVPLRNESGANERRYRFGKGAQAAGRRRHLRRVTDEVDGDEGWEELPDLHESPPNPF
ADTHAAPFYPPPPSLPQSASPPGRCTPPLNSRQPISYIPSPRPTNPFSTPFDDPRDRP