Protein Info for mRNA_2656 in Rhodosporidium toruloides IFO0880

Name: 11024
Annotation: KOG3417 Ras1 guanine nucleotide exchange factor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1369 transmembrane" amino acids 1243 to 1262 (20 residues), see Phobius details PF07653: SH3_2" amino acids 36 to 98 (63 residues), 28 bits, see alignment 2.1e-10 PF00618: RasGEF_N" amino acids 830 to 928 (99 residues), 67.7 bits, see alignment 1.4e-22 PF00617: RasGEF" amino acids 1097 to 1285 (189 residues), 147.7 bits, see alignment E=6.6e-47

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1369 amino acids)

>mRNA_2656 KOG3417 Ras1 guanine nucleotide exchange factor (Rhodosporidium toruloides IFO0880)
MDRSPSPSSISARPPSPALPFLVRALHTFDPSSLLPSTSSSSSQQIQSCLAFEAGTVVRC
LGRDESGWWDGEIVEWSGQEGEEKVGKRGWFPSNYVEVLGSEEGVVAAGTGEAIDAHLSQ
AAQTLLRAIDQNVGLLDAAVVDGKKAHYQPSTACLISSIRTVLSSTSALTRDSPVLRSHP
SLASARKKILSSLAHLVNQARKASSPVEDVGREEAEEMRKIAGETVAFVRHFIELAEQKG
VVVDLGTVSSGSSASATGKEVRAAKSMGNLRRPTVVALENPQAGTAFPLRSSPRSRSAEP
APTSPRAPTSPSLSTSSSHLTFHSPSSLSTHLSTLHDSLLSTLAALIGHVHSHSRSSSPA
ASFARLIDLTREAIERVRDVLVVVEKVGKLAPPLSPDQEDAASAQAEVGEGSPMKVLART
REKLYEATTALVQAARVATAPSSSSAPSSASSSPRKNSLDSIHTSSTSSTVSDADRAKSR
NRRRRDQDEQERKMLLSAATAVLRAGGDCVGAVKTVVGVVASTSRGEDGEHARFEVVLPR
PRAGEDEHDEPRLVAEEKHADARSVRSVGSTGTKFADAEEELSSSPRPSAAVNTRQPPPP
SPGLVAGPRSSPAAAAAAIDARRRNSHTISMLGRKATSLGCLRERYTGDGIEDGAVDGLR
VMSLAEGEEGEEEDEQEANTTSETEPASSSVAHIDHAKTPLTPRDSPAISMYRQHSTDSI
RSHQSSSRHTDFSHASSSNITAETSPRSSMQATSAKSVAGHSRSQSKKSLVRTSLGSVRK
SLPSSPSIAQTPSVPTPGATPRGSVSSSGPWYLQRDYLPREISFNADGHVSGGTLPCLVE
RMTLHDTTIDAAFSHTFLLTFRMFTTPLELARLLWARFDLSPPRHPETGAELSADEMKQW
TAQKLTPIRLRIYNLFKTWVESYWLHEQDREIVDDLLEWSQGRLKAAMPAASNRLVDLVN
KRIVAAEPVGENGNGFVQHSNASSTSVGSSSASHSINDSTLSLAVSNTTPASSIRSGLTG
TGGFLSRVQSTDKLRGGKSLAPLATARVSSDSYTPGSPSAASAPSPVITKSLVAALRPAL
SGRTPLLSSVTEVDALELARQLTILESRTYCSIRADELLGSNAATGGAKGPVEAFKARNV
RKMSTLSTRLTGWITETILGEQDQKRRTALLKYFIKVGERLLNLANYNALFAVFTALNSS
TISRLRKTWDGIAPKYRAVFDTLRKATDHGRNYAEYRQKIRQAVPPCLPFVGLFLTDLIF
VFEGNRAERPSPVDSSLQLINFDRYHKMARIVGELQRFQSPYPLVEVPEIQAYLSQQLEG
LKRGQDAQSLYRQSLLIEPRQAPGPGSSAASIISSNNGHKHRDLFNWRG