Protein Info for mRNA_2671 in Rhodosporidium toruloides IFO0880

Name: 11039
Annotation: K00111 glpA, glpD glycerol-3-phosphate dehydrogenase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

• PF01266: DAO
  • amino acids 161 to 526 (366 residues), 181.2 bits, E=1.8e-56
• PF00890: FAD_binding_2
  • amino acids 161 to 384 (224 residues), 30 bits, E=1.2e-10
• PF16901: DAO_C
  • amino acids 548 to 675 (128 residues), 142 bits, E=3.9e-45
• PF13499: EF-hand_7
  • amino acids 731 to 792 (62 residues), 43.8 bits, 1.1e-14
• PF13202: EF-hand_5
  • amino acids 733 to 755 (23 residues), 20.4 bits, see alignment (E = 1.1e-07)
  • amino acids 773 to 790 (18 residues), 16.1 bits, see alignment (E = 2.5e-06)
• PF13833: EF-hand_8
  • amino acids 745 to 793 (49 residues), 36.4 bits, 1.5e-12

Predicted SEED Role

"Glycerol-3-phosphate dehydrogenase (EC 1.1.5.3)" in subsystem Glycerol and Glycerol-3-phosphate Uptake and Utilization or Glycerolipid and Glycerophospholipid Metabolism in Bacteria or Respiratory dehydrogenases 1 (EC 1.1.5.3)

MetaCyc Pathways

• glycerol-3-phosphate shuttle (2/2 steps found)
• glycerophosphodiester degradation (2/2 steps found)
• glycerol and glycerophosphodiester degradation (3/4 steps found)
• glycerol degradation I (2/3 steps found)
• glycerol-3-phosphate to cytochrome bo oxidase electron transfer (1/2 steps found)
• glycerol-3-phosphate to fumarate electron transfer (1/2 steps found)
• glycerol-3-phosphate to hydrogen peroxide electron transport (1/2 steps found)
• nitrate reduction IX (dissimilatory) (1/2 steps found)
• nitrate reduction X (dissimilatory, periplasmic) (1/3 steps found)

KEGG Metabolic Maps

• Glycerophospholipid metabolism

Isozymes

No predicted isozymes

Use Curated BLAST to search for 1.1.5.3

Protein Sequence (861 amino acids)

>mRNA_2671 K00111 glpA, glpD glycerol-3-phosphate dehydrogenase (Rhodosporidium toruloides IFO0880)
MSRFFRPLRQTLPFRRPILTTSLLLPTYFTYSLLTSSPPNDAPIDAEALYFSSSNPLRME
SQVEGTLDRPSTMWTPPSREEMLRKLGAPPPKSDAEHDGKGGRSGLDSEGAKADKSSSLQ
RAGSQDTGSTHSSREPPTSQAGIKGASAGAGDAEKDDGEFDLLIVGGGATGAGVALDAAA
RGLKVGMVERDDFSSGTSSKSTKLVHGGVRYLQKAVFELDYEQYKLVKEALHERKTFLHT
APYLSHHLPIMLPVYTWWQIPYFFAGTKLYDILAGSANMESSYVLGKGKALEAFPMLKKD
GLTGAVVYYDGQHNDSRMNVALVMTAVQYGAVAANHTEVTSLIKDGEGRVKGAKMRDVLT
GREWETKAKGVINATGPFSDAVRQMDDGKAPNLVAPASGVHITLPNYYAPAKIGLIDPAT
SDGRVIFFLPWQGNTIAGTTDSPAKVEQHPIPKEEEIEWILNEVRNYLSPDIRVRRGDVL
SAWSGLRPLVKDPNAKDTQSLVRNHLIHVSESGLLTIAGGKWTTYRAMAEETVDRAVKEY
NLKPKRGCITKDVQLVGSQGWSPLMFIKLIQQFGLEVDVARHLSETYGDRSWGVCAMAPP
TGLRFPTHGNRLDATYPYIDAEVTWACRREYAATAVDVIARRTRLSFLNAEAALESLPQV
IDIMSKELGWTEERRNQEFSDATKFLRSMGLSEKRLATLTLDDVRNGRHRERLAIEDDLL
ARTVFTPEELETLKKRFAKMDANNDGKIDPADLSRTMSKLGFDQIDERTVRSILNEVDVD
RDGQISLEEYLDVAAGSKEVHLHNAFTDIAFPRNHGVTDDALDGAGDEGKNRSGGNEPPK
KEGEKIDYSNKTPPERTGGSW