Protein Info for mRNA_2674 in Rhodosporidium toruloides IFO0880

Name: 11042
Annotation: Hypothetical Protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1107 transmembrane" amino acids 296 to 316 (21 residues), see Phobius details amino acids 371 to 388 (18 residues), see Phobius details amino acids 404 to 428 (25 residues), see Phobius details amino acids 440 to 459 (20 residues), see Phobius details amino acids 465 to 486 (22 residues), see Phobius details amino acids 518 to 535 (18 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1107 amino acids)

>mRNA_2674 Hypothetical Protein (Rhodosporidium toruloides IFO0880)
MGGMATRSSAVSPHATEAPNIPTPASAARSNSPTHLPAFPPPPAASYRHRPEAQPTTTSA
APYTSRRSCDGGEWHPWSGEQHDRDQYDDGRGSEGFDADDHAPRHRRLANSLLDYRFLLF
RQPVATDPPPHPLCHRSLGPLPRLCLRLRPGAHVPLAPHARHAPRAVRVIPLHRRMGRSC
SPTRRSRPRRRLRSRGSGPDWRCKSLAELAELVRMAGLRHLLVHLALPAALEARHRRTRL
YRRLLARLESLHTLRLRLTLTSSPRTRRDLLRADGLLLPHDDEAATRPQEPELRHVLLPI
AAVVILALSLWLPWRLYKVVEEEKPKIDGWTELGERRKDDNAEYERLLEADPSPFSFLYC
DYRRPWACFRSIYLVVKLINVLLVVLIQKNNCAFRSFSTTYLSVIRQGCLFAFMCLFCIL
SAFSSPFLDIPSNSSDLVSRLGYVILAMLGLLAAVKIPYTDPATVAVNVVIYGFSAYFIV
ISKSFVQRWVKRAQRRLDFSIDIFSPHLDLSKHIARRVWQETFAALLLCSPLYAMPPKRK
LVFTQDPHLPPYLLDFGGSVSERFVEDLQILRNTGLDAYSDALNDIETDPQLMQLRHRIR
AELAGPDVFYRPTHDTLATTSCFGRLDICAFPFVAVFRYDELPDQPLHLNQVDELERLVE
QNASTTVVAARKVRLALRALEDQVVFRPHIESRLLGSMGAASVERHISYRFARLRIKHNS
TCRWRGYNFSSGFDVSLEYRDGEGVDGRGRLRTGQRLMLSGPQFGVLPDFSLTQDLAKLF
RLNRHLIDERLPDVERRMRQHREFFRREADLKSSVLSRGFLLSICGDDCLSTDDINQHLR
TTEKNPNIQQMVLLHEATFVRLEERMSTVTSSAVRAWWFLLFDDLWRRNPGLPAACFSPH
YSSSICYNPMSRAKLEAFLRERGFSTTSRYAYFHAGFLNQIYFYLEEQVFSPTSRSIPIR
LASSPDRLPFEQIHHPHARDGMHSNGVLLSNKRIEQSEVRPSRLTVTTGGGTDEDDRSIR
ERRAFVFEEIYEQPAPCLTHGNIIAWLHFQVGVKFSQATKVFLGLEPCMRDWRPSEDEGI
MLDLRRGRGGWEAPRLRMVEQGKAGPS