Protein Info for mRNA_2676 in Rhodosporidium toruloides IFO0880

Name: 11044
Annotation: K06672 SCC2, NIPBL cohesin loading factor subunit SCC2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1840 PF12765: Cohesin_HEAT" amino acids 1126 to 1167 (42 residues), 36.8 bits, see alignment (E = 3.9e-13) PF12830: Nipped-B_C" amino acids 1619 to 1761 (143 residues), 90.2 bits, see alignment 1.8e-29

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1840 amino acids)

>mRNA_2676 K06672 SCC2, NIPBL cohesin loading factor subunit SCC2 (Rhodosporidium toruloides IFO0880)
MAPQQQSVQHEAWRMQQLAGVLGLPEVRDEMDEMRRNVANGGMYGGLPPLQPPYPVLTDN
TPLPPTPVPPSALSSAFVSSNLVSPPSATSFAGPSNPCVPRHLAPPPPDQPTPDAAIRSL
VTEHASRAAAEARVREQAQAQAMQRSFSAGSAGGSSSAGPSTPSHPGRTLSNGRAAGLAI
PAQPFKTVPASSPDPLLMQSEPASEHKARRIVSATVGGVRYDPVARPSSQGAGSLSRKRS
SDSDLSSHFSSPLKPNASGSGLVSHFGPRPSQGEITPSTTNGRTASLGEPFTGAESAVKR
FKLESGQPAVGSSGRVAPGTGGTTGASDAVERLSDLLSDVFNADDSMVDDTSAAQVADKQ
KQMRSPGKASPQKQPRFFRVSAVSASSGLPLLHADTLRKMSSLVRTIASKNKAEELLEEV
EESGIGRWLKVLERSWEGVSGDGWEGWDAEAALPKEDEDAAPPTKGKGKAKKATSGKGRK
GSASPAKKGKGKGKERAQEDYEEEDEIDMLASSPTKAPTRRSTRSPSPHRAKSLTVGGAD
SDEDDSQRTVTSGSYWDADPSRLQTAESALRELCDALIAIRLALDILTLPSVSLPKHLFS
SEYLLALISALRRTLDSCIIPILSAPLTSPLAELATVRLREKTAEVCDGLVQATQSLASL
VKQEDLGDELVIAISYFSLEPYFHEAPPITGRSAAGGKDASPVVHSIKALRLAALAVVQA
VYARYPEQRSWIVEEVLGNLGRAELASGSTAAKKAKGGIRLRTGSTIQTVSALLLHLVQT
CPADLQLEVRKKLAQHAARTNPSSSQTMANGDIEMEDLGLGKRLLDDEDKEDEDDAGQDD
SIQRRLSGPALEQANKAARTIVGFLLQRSAKAGKTTGAAADTEYRAVLDHLVADLLATLR
LPEWPGAEVLLTVLCRSMMATLADSKSSHENNALKGIALEHLGNIASRICKDLAAAPGNL
PSLRDVHRFLPFRSDFPANEISQVVSAQDVDSLEKVFAAQKAVLEHLGKTERSSGQSEGA
LAFMRADYANDLLQARQAAASEGASQDERRQALVNRLGSLVEEVWNDEPMEDVFGPSPED
SQPKVDSLALDLWRSSTLPSMYQALLDRIVDASESTQVTLRTKALRAVSLVVAQNPDLFH
QDNIRRTIENRMLDSSPAVRDATIELVGKYVVSRPDLAKQYLPKLGERISDTGLSVRRRV
VKLLKVLYGVVDDEEQRIDICRRLVYRVLDEDDGIKELAVDAVGDLWFGATPKSAQQDDA
ARLTQLASIITQTTGNFKERPPPVDEALRAIMAKHAEKGTKPPLDRLREVIESLVDGLVE
DDRSMNLVAGIKTVFVLSAVDASLLSTQKATLLLPFLKSATTTEEQVISDYLLRIFRAAV
VAMPKTSSKFGKDLQTALMPMLNKPSQSVQTLQEVMACFCAVVHGQTQDYTTMIRVFGVT
LGRLQNEAQKLAKAENAAAVNTRQLSILCYMTGLLCEHGDFDRLREEQQDTKDLIDRITT
GSIAEHTFATLLRVHSLQLPPQVKPAVLTSLGFIYRAHPTLMMHSSSTAIMDAIFDSPNS
ALHVQVLRIIQDFLASQERAAASVASTATDKKAKKKGNAGVKMEELVGNVEGFADSGVAS
AIAQRYLNRIIDASLSPNPTMQRIGVDLLSTIARSGFSHPLSLSPTLVALTASPDAQLSA
KAFSTLSLLHQKHASLLATRFLEPAKSTHAFIAALSPDEPARGFRSDPPESMLGRWYALL
HKEKGQVQLDYLRTLSRAFEVDLGAKCDEVRDFLTPFTRSSLSLTWTFARRRISPSRASS
PNLSPHSTTNAPKNPSWSSHTSTRPSRSRGCKSFMRSRWD